Detailed information on CNT30117066


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Oryza nivaraOryza sativa53.5255.3999.45365forward
CNT30671670Oryza nivaraSetaria viridis1120.9597.3375forward
CNT30640430Oryza nivaraNymphaea colorata16.1323.9790110forward
CNT30387274Oryza nivaraTriticum turgidum21.1132.1493.06144forward
CNT30587569Oryza nivaraMusa acuminata16.4233.4391.96112forward
CNT30244083Oryza nivaraAvena sativa17.624.4997.5120forward
CNT30132393Oryza nivaraLolium perenne17.320.197.46118forward
CNT3067780Oryza nivaraLeersia perrieri15.2521.7687.5104forward
CNT30338963Oryza nivaraEragrostis tef20.6721.2793.62141forward
CNT30596509Oryza nivaraOryza meridionalis57.3325.7295.91391forward
CNT30147934Oryza nivaraBrachypodium distachyon17.1630.7194.87117forward
CNT30102551Oryza nivaraOryza rufipogon65.6948.38100448forward
CNT30577064Oryza nivaraOryza barthii65.6958.6495.09448forward
CNT30581265Oryza nivaraEchinochloa crusgalli17.7423.2297.52121forward
CNT30604352Oryza nivaraOryza punctata67.8980.3885.96463forward

Expression of CNT30117066

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 2 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 3 (61 aa)
MVVWSGSLRWVAQLLRGPLPVAAACTAKPRKATMARVASMAQRPWMSSHSRKRWRPNGSKP*

>peptide 4 (42 aa)
MCIHSHTHLVKYQDRSIDVQVDALIHHLGCSYITNHHHASRH*

>peptide 5 (58 aa)
VKSMQCAYVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

Sequence

>CNT30117066
GTAAAGTCTATGCAGTGTGCATATGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGATCGATGTACAAGTGGATGCATTAATTCAT
CATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGAC
CTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCG
AAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGGGGCCCCTTGCCG
GTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCT
GGAGGCCGAACGGGTCGAAGCCGTAGTCGCCGACGAGCGACCCGTCCAGGTAGTCCGGCGCCACCGCGCCGGGGAACCACAGCGGCCTGAACGTGCTCGC
CGCCGCTGCCACCGACGACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATATGTGGGTGGTGGTGAGGGGGGG