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Detailed information on CNT30453511


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 8e-61

BLAST vs NONCODE:
NONBNAT002655, E-value = 9e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695194Saccharum spontaneumOryza sativa63.9536.4392.88337forward
CNT30500595Saccharum spontaneumCoffea canephora25.2417.4881.2133forward
CNT30276136Saccharum spontaneumChenopodium quinoa31.6932.4382.63167forward
CNT30526508Saccharum spontaneumPhaseolus vulgaris46.1125.1378.6243forward
CNT30386996Saccharum spontaneumTriticum turgidum46.4945.2988.98245forward
CNT30562751Saccharum spontaneumActinidia chinensis39.2849.7683.09207forward
CNT30587569Saccharum spontaneumMusa acuminata22.5835.5290.76119forward
CNT30436081Saccharum spontaneumAegilops tauschii40.4241.6889.67213forward
CNT30132393Saccharum spontaneumLolium perenne33.0229.6490.23174forward
CNT30219415Saccharum spontaneumKalanchoe fedtschenkoi40.6168.5978.97214forward
CNT30596639Saccharum spontaneumOryza meridionalis56.3617.9592.93297forward
CNT30370623Saccharum spontaneumOryza glumipatula47.0617.9592.74248forward
CNT30102749Saccharum spontaneumOryza rufipogon41.7531.792.73220forward
CNT30577064Saccharum spontaneumOryza barthii51.0435.2194.05269forward
CNT30581456Saccharum spontaneumEchinochloa crusgalli63.1957.9193.99333forward
CNT3039307Saccharum spontaneumMarchantia polymorpha14.6123.1984.4277forward

Expression of CNT30453511

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKPRTTGSSISRLIEIIVNSRTRFDRWTGRSNGGLN*

>peptide 2 (50 aa)
MVLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSAARPSGSK*

Sequence

>CNT30453511
CAGCTGCAGCTCTCCTAATTAACGAGATCTCCATTAACAAAGGATCGATCTTGTCCCATACCCTCTCTCTCTCACTCATCACAAAATGAAACCACGCACG
ACGGGTTCATCCATCTCCAGGCTCATAGAGATCATAGTTAATTCAAGAACACGTTTCGATCGATGGACAGGGCGGAGCAATGGCGGGCTTAATTAAGAGG
ATGCTCCGAACGTGTCGAAGATGGTGTTGTTGAGCGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGC
GTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCGGCCGCCAGGCCGAGCGGGTCGAAGTAGGAGCCGCCGGGGTACAGCCTCTTCTCT
GGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAGCACCTCGATCCAGATGAGCGTCGAGATGGAGAACGGCAGCGGCTGGCCCAGGT
AGGAGGACCCGTCCACCAGCTCCACCT