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Detailed information on CNT30370757


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Oryza glumipatulaOryza sativa81.7659.1899.49390forward
CNT30640430Oryza glumipatulaNymphaea colorata36.4837.9187.93174forward
CNT30513329Oryza glumipatulaJuglans regia25.581985.25122forward
CNT3020107Oryza glumipatulaCitrullus lanatus26.6211.184.25127forward
CNT30526506Oryza glumipatulaPhaseolus vulgaris30.412.2482.76145forward
CNT30485914Oryza glumipatulaOlea europaea30.1917.9883.33144forward
CNT30289853Oryza glumipatulaTriticum aestivum35.2221.5197.02168forward
CNT30221234Oryza glumipatulaHordeum vulgare34.827.7196.39166forward
CNT30587569Oryza glumipatulaMusa acuminata23.4833.4391.96112forward
CNT30244332Oryza glumipatulaAvena sativa31.2418.3397.32149forward
CNT30659169Oryza glumipatulaTriticum dicoccoides25.3715.5598.35121forward
CNT30132393Oryza glumipatulaLolium perenne24.9520.2797.48119forward
CNT3067780Oryza glumipatulaLeersia perrieri25.5825.5297.54122forward
CNT30213985Oryza glumipatulaHelianthus annuus20.1318.0884.3896forward
CNT30680618Oryza glumipatulaTriticum urartu35.2217.4896.43168forward
CNT30338969Oryza glumipatulaEragrostis tef39.6230.5394.71189forward
CNT30620951Oryza glumipatulaCajanus cajan32.9115.184.71157forward
CNT30596509Oryza glumipatulaOryza meridionalis83.8626.3296.5400forward
CNT30360911Oryza glumipatulaLactuca sativa20.3421.3282.4797forward
CNT30428948Oryza glumipatulaPapaver somniferum30.618.6780.82146forward
CNT30120689Oryza glumipatulaCitrus clementina29.9812.5781.82143forward
CNT3036109Oryza glumipatulaCucumis melo2611.9382.26124forward
CNT30147934Oryza glumipatulaBrachypodium distachyon34.5943.3195.76165forward
CNT30102551Oryza glumipatulaOryza rufipogon81.7642.12100390forward
CNT30581265Oryza glumipatulaEchinochloa crusgalli35.4332.4497.63169forward
CNT30604352Oryza glumipatulaOryza punctata87.6372.5786.12418forward
CNT30556500Oryza glumipatulaPanicum hallii24.3219.7397.41116forward

Expression of CNT30370757

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 2 (46 aa)
GVLILQITTMQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 3 (80 aa)
MVVWSGSLRWVAQLLRGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGNVLAAAATDDAMAAPLLLLLLRECVGGGE

Sequence

>CNT30370757
GGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCC
TCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAG
CTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGGGGCCCCTTGCCGGTGGCG
GCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGAACGTGCTCG
CCGCCGCTGCCACCGACGACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATGTGTGGGTGGTGGTGAG