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Detailed information on CNT30221234


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Hordeum vulgareOryza sativa27.5526.0796.36165forward
CNT30672312Hordeum vulgareSetaria viridis25.8833.6289.03155forward
CNT30640430Hordeum vulgareNymphaea colorata24.3731.8188.36146forward
CNT30513329Hordeum vulgareJuglans regia20.371984.43122forward
CNT3020107Hordeum vulgareCitrullus lanatus21.211.183.46127forward
CNT30401900Hordeum vulgareBeta vulgaris23.0414.1180.43138forward
CNT30526506Hordeum vulgarePhaseolus vulgaris21.8711.0581.68131forward
CNT30485914Hordeum vulgareOlea europaea23.3717.4883.57140forward
CNT30562752Hordeum vulgareActinidia chinensis53.4225.380.94320forward
CNT30587569Hordeum vulgareMusa acuminata17.230.7591.26103forward
CNT30244332Hordeum vulgareAvena sativa26.8819.896.89161forward
CNT30132393Hordeum vulgareLolium perenne25.5426.0693.46153forward
CNT3067780Hordeum vulgareLeersia perrieri18.723.4397.32112forward
CNT30338969Hordeum vulgareEragrostis tef27.5526.6693.94165forward
CNT30620951Hordeum vulgareCajanus cajan24.2113.9480.69145forward
CNT30360911Hordeum vulgareLactuca sativa16.1921.3283.5197forward
CNT30370757Hordeum vulgareOryza glumipatula27.7134.896.39166forward
CNT30428948Hordeum vulgarePapaver somniferum21.047.4880.95126forward
CNT30120689Hordeum vulgareCitrus clementina21.711.4282.31130forward
CNT3036109Hordeum vulgareCucumis melo20.711.9382.26124forward
CNT30147934Hordeum vulgareBrachypodium distachyon27.5543.3194.55165forward
CNT30102551Hordeum vulgareOryza rufipogon27.5517.8296.36165forward
CNT30581265Hordeum vulgareEchinochloa crusgalli27.5531.6795.76165forward
CNT30604352Hordeum vulgareOryza punctata27.5528.6595.15165forward
CNT30556512Hordeum vulgarePanicum hallii25.3831.3492.76152forward

Expression of CNT30221234

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSLRGRASSPGPAPRCAGTRCTRSPAPRSR*

Sequence

>CNT30221234
GTGGATGCATTGAGTCACCATTGGTTCATATTTTACAAATCACCAAGTCCCAGCAGCTCTCCTATGTGATCGGACCAGCATTATAATCAACAAAGGATCT
TTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGTTCGTTACACGGACGCGCGTTCGTGTCGAAGATGGTGGTGTGCAGCGGGTCGC
TGAGGTGGGTGGCCCAGTTGTTGAGCGGACCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGAT
CTCCGCCAGCTGCAGAGTCTCCTTCTTCTCCGGGAGCCTCCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGA
TCACCAGCACCTCGATCCAGATGAGCGTGGTGATCGTGAACGGCAGCGGCTGACCCAGGTACGACGACCCGTCCACCAGCTCCACCTGCCAACATCGTCG
ACGTACGCCATACACAGATCAGTCGTCGTACTCCAGATTCACGTGCCTGCTAACTATCTACTCATATCGCCAATGAATCACATATGACTAGAGAGGACG