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Detailed information on CNT30520570


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 7e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Setaria italicaOryza sativa32.8248.7194.7321forward
CNT30513329Setaria italicaJuglans regia25.3638.6381.05248forward
CNT30276136Setaria italicaChenopodium quinoa17.0832.4381.44167forward
CNT30526506Setaria italicaPhaseolus vulgaris28.2223.2978.99276forward
CNT30485914Setaria italicaOlea europaea27.8133.9679.41272forward
CNT30289853Setaria italicaTriticum aestivum32.9241.2391.93322forward
CNT30386996Setaria italicaTriticum turgidum24.8544.9288.89243forward
CNT30587569Setaria italicaMusa acuminata12.1735.5289.92119forward
CNT30436081Setaria italicaAegilops tauschii21.9842.0789.3215forward
CNT30243799Setaria italicaAvena sativa34.0551.9592.19333forward
CNT30659938Setaria italicaTriticum dicoccoides23.7243.2892.67232forward
CNT30452520Setaria italicaSaccharum spontaneum64.8342.2991.01634forward
CNT30219415Setaria italicaKalanchoe fedtschenkoi21.2766.6778.37208forward
CNT30680618Setaria italicaTriticum urartu32.9233.5191.93322forward
CNT30620949Setaria italicaCajanus cajan34.8731.6980.06341forward
CNT30596639Setaria italicaOryza meridionalis29.6517.5292.76290forward
CNT30147934Setaria italicaBrachypodium distachyon22.958.7995.09224forward
CNT30102551Setaria italicaOryza rufipogon21.3722.5795.69209forward
CNT30577064Setaria italicaOryza barthii26.6934.1694.25261forward
CNT30581346Setaria italicaEchinochloa crusgalli31.1950.2595.08305forward
CNT30604352Setaria italicaOryza punctata21.3736.2894.74209forward
CNT30551395Setaria italicaOryza brachyantha33.0337.394.74323forward

Expression of CNT30520570

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVWSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSAARPSGSK*

>peptide 2 (56 aa)
MKQFWCTYVYIHTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 3 (48 aa)
CTSECINSSLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 4 (29 aa)
MCSPRRPPTKPWLLLLLLLLGVLRASGGGG

Sequence

>CNT30520570
TGTACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAAC
TATCGGATCGATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTT
AATTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGC
TGAGGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGAT
CTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCGGCCGCCAGGCCGAGCGGGTCGAAGTAGGAGCCGCCCGGGTAGAGCCTCTTCTCCGGGTCGAGC
TCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAGCACCTCGATCCAGATGAGTGTCGAGATGGAGAAGGGCAGCGGCTGCCCCAGGTAGGACGACC
CGTCCACAAGCTCAACCTGCCAGCCATCAATAACGTTCAGGTTAGACGCTTGCATAAGGATGGAATGAAACAATTTTGGTGCACATATGTATATATACAT
ACCTTGCCGGCGTCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACT
CGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCCAGGAATGTGCTCGCCGC
GGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTGAGAGCGTCAGGTGGTGGTGGTG