« Back to Digitaria exilis search


Detailed information on CNT30496270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Digitaria exilisSetaria viridis21.1835.4893.78209forward
CNT30520322Digitaria exilisSetaria italica23.7120.8494.44234forward
CNT30640553Digitaria exilisNymphaea colorata19.1523.4888.89189forward
CNT30708158Digitaria exilisGlycine max23.327.7482.17230forward
CNT30290078Digitaria exilisTriticum aestivum17.0221.9987.5168forward
CNT30221329Digitaria exilisHordeum vulgare10.2322.697.03101forward
CNT30387274Digitaria exilisTriticum turgidum12.5627.6897.58124forward
CNT30562752Digitaria exilisActinidia chinensis23.118.0281.58228forward
CNT30587569Digitaria exilisMusa acuminata9.8328.9690.7297forward
CNT30236263Digitaria exilisBrassica oleracea14.2929.0182.98141forward
CNT30554380Digitaria exilisOryza glaberrima22.1919.8290.41219forward
CNT30244083Digitaria exilisAvena sativa10.2320.6197.03101forward
CNT30262014Digitaria exilisBrassica rapa11.1423.9782.73110forward
CNT30452520Digitaria exilisSaccharum spontaneum23.115.2194.3228forward
CNT30132672Digitaria exilisLolium perenne21.1837.4688.04209forward
CNT30229721Digitaria exilisAnanas comosus23.519.8887.07232forward
CNT30340460Digitaria exilisEragrostis tef23.327.0691.74230forward
CNT30478099Digitaria exilisArabidopsis halleri14.3920.0881.69142forward
CNT30596509Digitaria exilisOryza meridionalis23.415.290.91231forward
CNT30370789Digitaria exilisOryza glumipatula23.316.7290.87230forward
CNT3031825Digitaria exilisTheobroma cacao14.0827.7481.29139forward
CNT30328621Digitaria exilisAsparagus officinalis11.2537.2588.29111forward
CNT30120621Digitaria exilisCitrus clementina12.8732.6583.46127forward
CNT30147934Digitaria exilisBrachypodium distachyon10.0325.9893.9499forward
CNT30581381Digitaria exilisEchinochloa crusgalli18.4465.4792.86182forward
CNT30116923Digitaria exilisOryza nivara17.6320.9189.66174forward
CNT30556762Digitaria exilisPanicum hallii7.620.9593.3375forward

Expression of CNT30496270

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MKWWSMITYLAGVLPGDASEPLDGEGAEGGEHGPAAMDELALTEPLEAEDLAVRLERGGLDLGGLEPGADDGAGLVLGQVLVQR

>peptide 2 (75 aa)
MDSSISQPTEITVNSRTPFRPMDGSETMARARLRGSSSKRIEDGGVERVAEVGGPVVERALAGGGGLHGEAEEGW*

>peptide 3 (52 aa)
MVVWRGSLRWVAQLLSGPLPVAAACTAKPRKAGELPFRDAVAVAYIYVYMYI*

>peptide 4 (43 aa)
NGASSSQDVQVNALIDHWFIYYKSPSPSSSSRKGGVWLPQTDF*

Sequence

>CNT30496270
AATGGTGCATCATCATCTCAAGATGTACAAGTGAATGCATTAATTGATCACTGGTTCATATATTACAAATCACCGAGTCCCAGCAGCAGCTCTCGTAAGG
GGGGTGTTTGGCTCCCACAGACTGATTTTTAGCTCAAAGCTAGAGACCAATTTGGAAGACTAGTCATGAGCTAATTGCAAAACTTCATGACTAATTGGTG
AGACGAACTCATCGACATTAGATAGGATCTATGGGTTCGTCTCACTAATTAGCCATGACGTATGCAATTAGTTAGCGCATTTGTAGTCTTCCTAATTAGT
CTCCAAACATCGGGCTAAAAGTTAACTCATTGGAGCCAAACACCGCCTAATTTACAAGATCTCCATTAACAAAGGATCGGATCGACCTTCCTCCCACACC
CTCTCACTCATCATCACAAAATGACACCAAGCGCGCATGGATTCATCCATCTCCCAGCCGACAGAGATAACGGTTAATTCAAGAACACCTTTTCGGCCGA
TGGACGGATCAGAAACAATGGCGAGAGCGCGCTTAAGAGGATCCAGCTCCAAACGTATCGAAGATGGTGGTGTGGAGAGGGTCGCTGAGGTGGGTGGCCC
AGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCTGGTGAGCTTCCGTTCCGTGACGCCGTCGCCGTTGCATATAT
ATATGTATATATGTATATATAGCTAGACATGAAATGAAATGGTGGTCAATGATTACATACCTTGCCGGCGTCCTGCCAGGTGACGCCAGTGAGCCACTCG
ACGGTGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCATGGATGAGCTCGCACTCACGGAACCTCTGGAGGCCGAAGACCTCGCTGTAAGGCTGGA
GCGTGGTGGACTTGACCTCGGAGGACTCGAACCGGGTGCCGATGATGGCGCCGGGCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGT