Detailed information on CNT30338963


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 9e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526506Eragrostis tefPhaseolus vulgaris21.8712.2482.76145forward
CNT30485914Eragrostis tefOlea europaea21.7217.9881.94144forward
CNT30587569Eragrostis tefMusa acuminata17.0433.7389.38113forward
CNT30244332Eragrostis tefAvena sativa22.4718.3395.97149forward
CNT30213985Eragrostis tefHelianthus annuus19.7624.6782.44131forward
CNT30620951Eragrostis tefCajanus cajan21.8713.9484.14145forward
CNT30120689Eragrostis tefCitrus clementina21.5712.5780.42143forward
CNT30117066Eragrostis tefOryza nivara21.2720.6793.62141forward

Expression of CNT30338963

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GRFRIIPKDRCTSECINSSLVHILHITKKFQQFS*

>peptide 2 (36 aa)
QAGFVSSQKIDVQVNALIHHWFIYYTSPRSSSSSPN*

>peptide 3 (47 aa)
MNKDHRVPIPSRSPQNQTTHAFIHLEHILIDGWIGAESNIRMALIIN*

>peptide 4 (60 aa)
MVVWSGSLRCVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSALRWNSM*

Sequence

>CNT30338963
CAGGCCGGTTTCGTATCATCCCAAAAGATCGATGTACAAGTGAATGCATTAATTCATCATTGGTTCATATATTACACATCACCAAGAAGTTCCAGCAGTT
CTCCTAATTAACCATACATCCTCCATTAAGAACATGAACAAAGATCATCGTGTCCCCATACCCTCTCGCTCGCCACAAAATCAAACGACGCACGCGTTCA
TCCATCTCGAGCACATTCTCATCGACGGATGGATCGGAGCAGAAAGCAATATACGGATGGCCTTAATTATTAATTAAGAGGATCCGGAGGAGAAGGTGTC
GAAGATGGTGGTGTGGAGCGGGTCGCTAAGGTGTGTGGCCCAGTTGTTGAGCGGGCCCTTGCCTGTGGCCGCGGCCTGCACGGCGAAGCCGAGGAAGGCG
ACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACCAGCA
CCTCGATCCAGATGAGCGTCGAGATGGAGAAGGGCAGCGGCTGGCCCAGGTAGGACGACCCGTCCACCAGCTCAACCTACAGGTTTTGGATTTCGATCGA
GTTGTTCATGCACAGATCGAGCAGAATTGCAATTCAAATTTCAAATCAATGTTCATAAGTGTG