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Detailed information on CNT30581265


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Echinochloa crusgalliOryza sativa46.0737.9196.67240forward
CNT30640430Echinochloa crusgalliNymphaea colorata37.4342.4888.21195forward
CNT3020107Echinochloa crusgalliCitrullus lanatus24.3811.184.25127forward
CNT30221234Echinochloa crusgalliHordeum vulgare31.6727.5595.76165forward
CNT30587569Echinochloa crusgalliMusa acuminata20.5431.9490.65107forward
CNT30244083Echinochloa crusgalliAvena sativa45.8748.7893.72239forward
CNT30338969Echinochloa crusgalliEragrostis tef32.6327.4697.65170forward
CNT30620951Echinochloa crusgalliCajanus cajan27.4513.7584.62143forward
CNT30596509Echinochloa crusgalliOryza meridionalis33.7811.5897.16176forward
CNT30370757Echinochloa crusgalliOryza glumipatula32.4435.4397.63169forward
CNT3036109Echinochloa crusgalliCucumis melo23.811.9381.45124forward
CNT30102551Echinochloa crusgalliOryza rufipogon46.0725.9296.67240forward
CNT30117066Echinochloa crusgalliOryza nivara23.2217.7497.52121forward
CNT30604352Echinochloa crusgalliOryza punctata45.8741.4995.82239forward
CNT30556500Echinochloa crusgalliPanicum hallii23.6120.9297.56123forward

Expression of CNT30581265

Peptides detected in this lncRNA

>peptide 1 (60 aa)
DDRCTSECIDSSLVHILQMTKSQALLINATSINKGLDRIHHLPIPSHSSSQNDTVPSISS*

>peptide 2 (61 aa)
MVVWSGSLRCVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDASPSGSK*

Sequence

>CNT30581265
AAGACGATAGATGTACAAGTGAATGCATTGATTCATCACTGGTTCATATATTACAAATGACCAAGTCCCAAGCTCTCCTAATTAACGCGACCTCCATTAA
CAAAGGACTAGATCGGATCCACCATCTTCCCATACCCTCTCACTCGTCATCACAAAATGATACAGTACCATCCATCTCCAGCTGATGATAGAGATCACGG
TTAATTAATTCAAGAACATCACGTTTCGGACGTACGGATCGACGCATGGATATATGGGCCGGGCTTAAGAGGATCCTCCGAAGGTGTCGAAGATGGTGGT
GTGGAGCGGGTCGCTGAGGTGCGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGG
CGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAGCCCCAGCGGGTCGAAGTAGGACCCGCCCGGGTACGACGACC
CGTCCACCAGCTCCACCTGTA