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Detailed information on CNT30554457


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 4e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Oryza glaberrimaOryza sativa62.0354.8697.32745forward
CNT30520631Oryza glaberrimaSetaria italica23.920.0693.38287forward
CNT30375654Oryza glaberrimaArabidopsis thaliana11.1627.6982.09134forward
CNT30290500Oryza glaberrimaTriticum aestivum24.0656.0192.04289forward
CNT30221568Oryza glaberrimaHordeum vulgare20.7323.7884.34249forward
CNT30386996Oryza glaberrimaTriticum turgidum20.445.2990.61245forward
CNT30562751Oryza glaberrimaActinidia chinensis7.4121.3985.3989forward
CNT30587569Oryza glaberrimaMusa acuminata6.8324.4890.2482forward
CNT30436081Oryza glaberrimaAegilops tauschii17.942.0791.16215forward
CNT30244633Oryza glaberrimaAvena sativa24.1553.690.34290forward
CNT30659570Oryza glaberrimaTriticum dicoccoides18.5740.6989.69223forward
CNT30452520Oryza glaberrimaSaccharum spontaneum20.7316.6192.77249forward
CNT30229721Oryza glaberrimaAnanas comosus20.8210.6585.2250forward
CNT3067780Oryza glaberrimaLeersia perrieri8.6621.7687.5104forward
CNT30680853Oryza glaberrimaTriticum urartu20.4844.0991.46246forward
CNT30596514Oryza glaberrimaOryza meridionalis62.747.2192.3753forward
CNT30370623Oryza glaberrimaOryza glumipatula100.3387.1998.421205forward
CNT30147796Oryza glaberrimaBrachypodium distachyon11.5735.0194.96139forward
CNT30102551Oryza glaberrimaOryza rufipogon33.2243.0999.5399forward
CNT30577064Oryza glaberrimaOryza barthii33.8153.14100406forward
CNT30580706Oryza glaberrimaEchinochloa crusgalli24.4846.6793.2294forward
CNT30116951Oryza glaberrimaOryza nivara89.6872.8295.731077forward
CNT30604335Oryza glaberrimaOryza punctata35.9772.1283.33432forward
CNT30556512Oryza glaberrimaPanicum hallii11.4928.4594.2138forward
CNT30551395Oryza glaberrimaOryza brachyantha18.5725.7595.96223forward

Expression of CNT30554457

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVVWSGSLRWATMARRACLISASCSRSFFSGSDANPSGSK*

>peptide 2 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 3 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

>peptide 4 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 5 (71 aa)
DTYYNFVNINTCQVKSMQCACVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 6 (55 aa)
MLVVMYGGVSCTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

Sequence

>CNT30554457
GACACCTATTATAACTTTGTTAATATCAATACATGTCAGGTAAAGTCTATGCAGTGTGCATGTGTGCATTCACAGTCACACTCACTTAGTCAAATACCAA
GATCGATCGATCGATGTACAAGTGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCC
AGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGA
ACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCG
CTGAGGTGGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGT
AGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGA
GATCGAGAACGGCAGCGGCTGCCCCAGGTACGACGACCCATCCACCAGCTCCACCTGAAAAACACCATCGGACCATTCCTACGTCAGTGTCATCGTCCTC
GTCCGCGGCGCCGGCGACACGTAGTAACCAGGTTTTAAATCTTCAGCTATAGCTATTTGAAAAAAGGTGTAGCAATTTGTTCTCATGTACAATTTAGTCA
TAGCTGCCGCTATTTTGAGAGGCTAAACGCTAAATGTTTTAGCCCGCTAGCTATTTGAAACAGTGGTAGTGAGAAACGCAAACGCCCAGAGATTTTTCGG
CTATCCCCACGGGCTAGACGACCTGAGTTTGAAGCCTTACTCTTTCTAATTATTTGATATATTAGGTCATTTTTTAATATTTGCTTTTTAAAAAAAATGC
TGGTAGTAATGTATGGGGGAGTATCGTGTACCTTGCCGGCGTCTTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCAT
GGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGGAGGCCGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCG
A