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Detailed information on CNT3023899


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 8e-90

BLAST vs NONCODE:
NONPOPT001747, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500595Populus trichocarpaCoffea canephora22.8919.5884.56149forward
CNT30281605Populus trichocarpaChenopodium quinoa53.353.1481.56347forward
CNT30382112Populus trichocarpaManihot esculenta42.5552.5685.92277forward
CNT30401900Populus trichocarpaBeta vulgaris37.7925.1580.89246forward
CNT30485914Populus trichocarpaOlea europaea37.9430.8481.38247forward
CNT30708158Populus trichocarpaGlycine max40.7131.9780265forward
CNT30562752Populus trichocarpaActinidia chinensis47.7724.5880.39311forward
CNT30587569Populus trichocarpaMusa acuminata10.9121.1985.9271forward
CNT30236263Populus trichocarpaBrassica oleracea21.9729.4283.22143forward
CNT30144505Populus trichocarpaMedicago truncatula32.2632.4679.05210forward
CNT30262014Populus trichocarpaBrassica rapa19.227.2384125forward
CNT30357882Populus trichocarpaLactuca sativa22.8921.1981.21149forward
CNT3031825Populus trichocarpaTheobroma cacao20.1226.1588.55131forward
CNT30328621Populus trichocarpaAsparagus officinalis10.9123.8385.9271forward
CNT30120621Populus trichocarpaCitrus clementina34.4157.5882.14224forward
CNT3036109Populus trichocarpaCucumis melo44.3927.8280.97289forward
CNT30725365Populus trichocarpaLupinus angustifolius38.5615.4984.46251forward

Expression of CNT3023899

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVVADQASCQVTPVSHSTESAPRVANIAHLP*

>peptide 2 (58 aa)
PGQIKAHFLRGQVVNNGCVERIAQVSSPVVEGTFSSNPSLNCEAKEARPRGSKNWPPG*

>peptide 3 (30 aa)
MGQIRNHQPSCHLGTQVPWLLDTKVGGLEY*

Sequence

>CNT3023899
TCCCAGGGCAAATTAAGGCACATTTTTTAAGAGGACAAGTTGTCAATAATGGTTGTGTGGAGAGGATCGCTCAAGTGAGTAGCCCAGTTGTTGAGGGGAC
CTTTTCCAGTAACCCAAGCTTGAACTGCGAAGCCAAGGAAGCTAGGCCTAGAGGATCAAAGAACTGGCCTCCTGGGTAGAGCCTTTTCTCTGGGTCAAGC
TCTGCGTTCCTTTGGAATTCAATGTATCCAATAATGACAGCCTCAATCCAGATCAATGCTGTAATGGAGAATGGTAGTGGCTGACCAAGCATCTTGCCAG
GTAACTCCAGTGAGCCACTCAACAGAGAGTGCACCAAGAGTAGCCAACATAGCCCACCTTCCATGAATGAGCTCACACTCCCTGAACCTTTGCAACCCAA
AAACCTCACTGTAAGGCTGAAATGGAGTTGACTTCACATCAGCAAACTCAGTACGTGTCCCAATAATATCTCCAGCCAGATTCTTAGCCAAGTTTTGGTC
CAAAGAGTCAAGCTCGAACTGCAAGTACTCAGCTGGTTTGCCCAACCCAAATGGGTCAAATCCGTAATCACCAACCAAGCTGCCATCTAGGTACTCAGGT
GCCTTGGCTCCTGGATACCAAAGTGGGCGGTCTGGAGTACTAGGCTTTATA