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Detailed information on CNT30120621


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-42

BLAST vs NONCODE:
NONPOPT001747, E-value = 4e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382112Citrus clementinaManihot esculenta52.1938.5281.28203forward
CNT30401900Citrus clementinaBeta vulgaris29.0511.5585.84113forward
CNT30526506Citrus clementinaPhaseolus vulgaris30.8510.1384.17120forward
CNT30485914Citrus clementinaOlea europaea29.3114.2385.96114forward
CNT30708158Citrus clementinaGlycine max52.1924.4981.28203forward
CNT30221568Citrus clementinaHordeum vulgare22.118.2184.8886forward
CNT30562752Citrus clementinaActinidia chinensis25.717.9186100forward
CNT30587569Citrus clementinaMusa acuminata26.9931.3482.86105forward
CNT30262014Citrus clementinaBrassica rapa31.8827.0282.26124forward
CNT30132672Citrus clementinaLolium perenne21.3414.8785.5483forward
CNT3023899Citrus clementinaPopulus trichocarpa57.5834.4182.14224forward
CNT3036109Citrus clementinaCucumis melo59.922.4381.55233forward
CNT30496270Citrus clementinaDigitaria exilis32.6512.8783.46127forward
CNT30725365Citrus clementinaLupinus angustifolius29.827.1685.34116forward

Expression of CNT30120621

Peptides detected in this lncRNA

>peptide 1 (52 aa)
PSTGGYTRNLRDEGVKNGCVKRIAQVGSPVVERAFSGDNSLDSEAKECNHGK*

>peptide 2 (79 aa)
MASNPSEPLNSEGTESSQHGPTSMNELTLTEPLQTKDFSVRLKRRGLHVRGLNPRPNNIASRVLSQVLVQRVIVILQVLR

Sequence

>CNT30120621
CCAAGTACTGGAGGCTACACCAGAAATCTAAGAGATGAAGGTGTCAAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCCCAGTTGTTGAGAGGG
CCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCCAAGGAATGCAACCATGGCAAGTAATCCCAGTGAGCCACTCAACAGTGAGGGCACCGAGAGTAGCC
AACATGGCCCAACGTCCATGAATGAGCTCACACTCACGGAACCTCTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTGGACTGCATGTCAGAGG
CCTCAATCCTCGTCCCAATAATATCGCCAGCCGGGTTCTTAGCCAAGTTCTGGTCCAACGAGTCATAGTCATACTGCAAGTACTCCGCT