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Detailed information on CNT30132393


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Lolium perenneOryza sativa20.2718.897.48119forward
CNT30671994Lolium perenneSetaria viridis20.2718.6897.48119forward
CNT30485914Lolium perenneOlea europaea21.4715.7380.95126forward
CNT30708123Lolium perenneGlycine max42.9318.8680.95252forward
CNT30287394Lolium perenneTriticum aestivum66.6146.7187.21391forward
CNT30221234Lolium perenneHordeum vulgare26.0625.5493.46153forward
CNT30387400Lolium perenneTriticum turgidum51.9660.7685.25305forward
CNT30587569Lolium perenneMusa acuminata40.7271.3485.36239forward
CNT30244696Lolium perenneAvena sativa93.02103.6190.11546forward
CNT30659169Lolium perenneTriticum dicoccoides65.7649.6187.56386forward
CNT30453511Lolium perenneSaccharum spontaneum29.6433.0290.23174forward
CNT30229777Lolium perenneAnanas comosus20.2716.2189.92119forward
CNT30370757Lolium perenneOryza glumipatula20.2724.9597.48119forward
CNT30147934Lolium perenneBrachypodium distachyon20.130.9795.76118forward
CNT30102551Lolium perenneOryza rufipogon20.2712.8597.48119forward
CNT30580706Lolium perenneEchinochloa crusgalli29.6427.6291.38174forward
CNT30117066Lolium perenneOryza nivara20.117.397.46118forward
CNT30604352Lolium perenneOryza punctata22.8323.2694.78134forward
CNT30556512Lolium perennePanicum hallii25.7231.1391.39151forward
CNT30551395Lolium perenneOryza brachyantha24.5316.6392.36144forward

Expression of CNT30132393

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSRRGRAASPGPARRCAGTRCSRSPAPRSR*

>peptide 2 (46 aa)
MVVCSGSLRWVAQLLRGPLPVAAACTAKPRKPTMARPSGSKYEPPG*

Sequence

>CNT30132393
TTGTAATCGCAAAACAATAAAGAAAGAAGAAGACAGCTCAAGATCGATGTACAAGTGGATGCATTAGGTCACCATTGGTTCATATTTTACAAATCTCCAA
GTCCCAGCAGCTGTCCTATGTAATCAGACCTGCATTAATCAACAAAGGATCTTTTGCGGTACTCTCTCTCATCGCTCGTCACACAAAACGAAACCACGTT
CTTACAAGGACGCGTTCGTCCATTTTTGCAGCCGAGCTGACAGAAGCGTATACACTGCTCGACGACCGAGACCGGCCGCGCGCTTAAGAGGAGCCGAGGG
TGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGGGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAA
GCCGACCATGGCGAGGCCCAGCGGGTCGAAGTATGAGCCGCCGGGGTAGAGCCGCCTCTCCGGGTCCAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCG
ATCACCAGCACCTCGATCCAGATGAGCGTCGTGATCGTGAATGGCAGCGGCTGGCCCAGGTACGACGAGCCGTCAATCAGCTCCACC