Detailed information on CNT30556500


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640430Panicum halliiNymphaea colorata17.182290.1101forward
CNT30485914Panicum halliiOlea europaea20.7515.2381.15122forward
CNT30221329Panicum halliiHordeum vulgare19.926.1799.15117forward
CNT30587569Panicum halliiMusa acuminata17.5230.7590.29103forward
CNT30244083Panicum halliiAvena sativa19.7323.6799.14116forward
CNT30659169Panicum halliiTriticum dicoccoides20.7515.6897.54122forward
CNT30132399Panicum halliiLolium perenne13.7827.4698.7781forward
CNT30370757Panicum halliiOryza glumipatula19.7324.3297.41116forward
CNT30147934Panicum halliiBrachypodium distachyon19.7330.4595.69116forward
CNT30581265Panicum halliiEchinochloa crusgalli20.9223.6197.56123forward
CNT30604352Panicum halliiOryza punctata19.7320.1496.55116forward

Expression of CNT30556500

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMAR*

>peptide 2 (32 aa)
MPCHHHQCNAHDFIHQRLHGMGLMKENGYVRYL

>peptide 3 (86 aa)
FFFLLSECINSSSLVHILQITKSQQQRLSLINETSINKRIGWIFPYPLTHHKMIPRTDSHPSSPAYDSRDHSYFKSSTVRSMDGRS*

Sequence

>CNT30556500
TTTTTTTCTTTTTGCTGAGTGAATGCATTAATTCATCATCACTGGTTCATATATTACAAATCACCAAGTCCCAGCAGCAGCGGCTCTCCCTAATCAACGA
GACCTCCATTAACAAAAGGATCGGATGGATCTTCCCATACCCTCTCACTCATCACAAAATGATACCACGCACGGATTCACATCCATCGTCTCCAGCGTAT
GATAGCAGAGATCACAGTTACTTCAAGAGTAGCACGGTTCGATCGATGGACGGACGGAGCTAGCCATGGCGGGCGGGCTTAGGAGGATCCTGATAATCCG
AACGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGA
GGAAGGCGACCATGGCGAGATGAGCGTCGAGATGGAGAAGGGCAGCGGCTGACCCAGGTAGGACGACCCGTCCACCAGCTCCACCTGCCATGCCATGCCA
TCATCATCAATGCAACGCTCATGATTTCATTCATCAACGCTTGCACGGCATGGGTTTAATGAAAGAAAATGGGTATGTACGGTACCTT