Detailed information on CNT30244696


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513316Avena sativaJuglans regia20.8716.9883.64110forward
CNT30708123Avena sativaGlycine max44.2117.4481.55233forward
CNT30587569Avena sativaMusa acuminata45.3571.3485.77239forward
CNT30132393Avena sativaLolium perenne103.6193.0290.11546forward

Expression of CNT30244696

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSLSSLVIQNQTTFVHGLRVRPSCSRAYRTVYTARRPRLATDRALKRSPRCRRWWCAAGR*

>peptide 2 (41 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARPSGSK*

>peptide 3 (70 aa)
DVQVDALSHHWFIFYKSPSPSSCPRPALIKKGCPSHHSSYKTKPRSYTDYAFVHLAAELTEPYTLLDDRD*

Sequence

>CNT30244696
TGATGTACAGGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCTCCAAGTCCCAGCAGCTGTCCTAGACCTGCATTAATCAAGAAAGGATGT
CCCTCTCATCACTCGTCATACAAAACCAAACCACGTTCGTACACGGACTACGCGTTCGTCCATCTTGCAGCCGAGCTTACAGAACCGTATACACTGCTCG
ACGACCGAGACTAGCGACCGACCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGA
GTGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCCCAGCGGGTCGAAGTAGGAGCCGCCGGGGTACAGCCG
CCTCTCCGGGTCCAGCTCAGCGTTGCGCTGGAACTCGATGTAGCCGATCACCAGCACCTCGATCCAGATGAGCGTCGTGATCGTGAAGGGCAGCGGCTGA
CCCAGGTACGACGACCCGTCAATCAGC