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Detailed information on CNT30551395


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 2e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Oryza brachyanthaOryza sativa38.1150.0895.45330forward
CNT30672312Oryza brachyanthaSetaria viridis16.9731.8994.56147forward
CNT30520570Oryza brachyanthaSetaria italica37.333.0394.74323forward
CNT30640553Oryza brachyanthaNymphaea colorata33.2635.7882.64288forward
CNT30513329Oryza brachyanthaJuglans regia34.0645.9580.68295forward
CNT30375654Oryza brachyanthaArabidopsis thaliana36.8465.9178.68319forward
CNT30276136Oryza brachyanthaChenopodium quinoa12.3620.7885.05107forward
CNT30402245Oryza brachyanthaBeta vulgaris18.7128.1779.63162forward
CNT30526506Oryza brachyanthaPhaseolus vulgaris34.8725.4981.13302forward
CNT30485914Oryza brachyanthaOlea europaea31.5234.0879.12273forward
CNT30708177Oryza brachyanthaGlycine max34.5328.4282.94299forward
CNT30179479Oryza brachyanthaSecale cereale28.5235.6984.62247forward
CNT30289853Oryza brachyanthaTriticum aestivum37.5341.6193.23325forward
CNT30221568Oryza brachyanthaHordeum vulgare31.9926.4685.92277forward
CNT30386996Oryza brachyanthaTriticum turgidum25.7541.2292.38223forward
CNT30562744Oryza brachyanthaActinidia chinensis15.8222.0687.59137forward
CNT30587569Oryza brachyanthaMusa acuminata11.4329.5591.9299forward
CNT30554457Oryza brachyanthaOryza glaberrima25.7518.5795.96223forward
CNT30436081Oryza brachyanthaAegilops tauschii24.8342.0793.02215forward
CNT30243799Oryza brachyanthaAvena sativa39.2653.0490.59340forward
CNT30659938Oryza brachyanthaTriticum dicoccoides27.0243.6692.74234forward
CNT30452520Oryza brachyanthaSaccharum spontaneum37.321.5593.5323forward
CNT30132393Oryza brachyanthaLolium perenne16.6324.5392.36144forward
CNT3013737Oryza brachyanthaZea mays12.5923.3991.74109forward
CNT30229721Oryza brachyanthaAnanas comosus34.8712.8687.09302forward
CNT30219415Oryza brachyanthaKalanchoe fedtschenkoi24.0266.6781.73208forward
CNT3067780Oryza brachyanthaLeersia perrieri14.0925.5295.08122forward
CNT30680618Oryza brachyanthaTriticum urartu39.0335.1792.6338forward
CNT30338969Oryza brachyanthaEragrostis tef20.3228.4394.32176forward
CNT30620949Oryza brachyanthaCajanus cajan34.4127.781.88298forward
CNT30596639Oryza brachyanthaOryza meridionalis40.0720.9789.05347forward
CNT30360911Oryza brachyanthaLactuca sativa11.221.3283.5197forward
CNT30370623Oryza brachyanthaOryza glumipatula25.7516.1495.96223forward
CNT30328621Oryza brachyanthaAsparagus officinalis13.2838.5981.74115forward
CNT30147934Oryza brachyanthaBrachypodium distachyon25.8758.7991.07224forward
CNT30102749Oryza brachyanthaOryza rufipogon25.431.795.45220forward
CNT30577064Oryza brachyanthaOryza barthii30.1434.1695.4261forward
CNT30581346Oryza brachyanthaEchinochloa crusgalli33.647.9494.5291forward
CNT30116951Oryza brachyanthaOryza nivara31.7618.5992275forward
CNT30604352Oryza brachyanthaOryza punctata26.139.2494.69226forward
CNT30556512Oryza brachyanthaPanicum hallii13.7424.5492.44119forward
CNT3039307Oryza brachyanthaMarchantia polymorpha16.8643.9880.82146forward

Expression of CNT30551395

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MATSPPSSPPPSSRRRTRTSPRCARSAAPGPPAGSPGTCSPPRPPTTPWLLTA*

>peptide 2 (47 aa)
LQITIARVVHQPALLSNSGNQQRISPLARPPKLNRARRSARIVWIPS*

>peptide 3 (62 aa)
MMVVWSGSLRWVAQLLSGPLPVAAACTANPRKATMARRACLISASCSLSFFSGSDAKPSGSK*

>peptide 4 (56 aa)
MRPFCGAGSASRVPRNVLAAAATDDAMAAHGLASPPPPPPSRECGRRSVWVVGGEEL

Sequence

>CNT30551395
TTACAAATCACCATTGCAAGAGTCGTCCACCAACCAGCTCTCCTAAGTAACAGTGGTAATCAACAAAGGATCTCACCCCTCGCTCGCCCGCCAAAACTAA
ACCGCGCGCGAAGAAGCGCACGCATCGTTTGGATCCCGTCCTGAAACTCGCGCGAAATTAATTAAGTTGTGGCTTAATTTAAGAGGAGGAGAAGGTGTCG
ATGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACCGCAAACCCGAGGAAGGCGA
CCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCTCTCCTTCTTCTCCGGGTCCGACGCCAAGCCGAGCGGGTCGAAGTAGGAGCCTCCCGG
GTAGAGCCTCCTCTCCGGGTCGAGCTCCGCGTTGCGCTGGAACTCGATGTAGCCGATCACCAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGC
AGCGGCTGCCCCAGGTACTCCGCCGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCCCCGATCATCGACCCGTCCAGGTAGTCCGGCGCCACCGCGC
CCGGGAACCACAGCGGCCGGTCCGTCGTCGATGGCGACTTCGCCACCTTCTTCGCCGCCGCCTTCTTCCCGCCGCCGAACCCGAACCTCGCCACGATGCG
CCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTCCCCAGGAACGTGCTCGCCGCCGCGGCCACCGACGACGCCATGGCTGCTCACGGCCTAGCTTCTCCT
CCTCCTCCTCCTCCTTCCCGAGAGTGTGGCCGGAGAAGTGTTTGGGTGGTGGGTGGTGAGGAGCTC