Detailed information on CNT30671994


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 5e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520609Setaria viridisSetaria italica60.2835.1399.74384forward
CNT30640440Setaria viridisNymphaea colorata24.9623.885.53159forward
CNT30221329Setaria viridisHordeum vulgare18.6826.6298.32119forward
CNT30587569Setaria viridisMusa acuminata16.1730.7590.29103forward
CNT30659169Setaria viridisTriticum dicoccoides23.8619.5488.16152forward
CNT30132393Setaria viridisLolium perenne18.6820.2797.48119forward
CNT30720416Setaria viridisTriticum spelta32.6534.6187.02208forward
CNT30596511Setaria viridisOryza meridionalis54.7941.990.83349forward
CNT30148661Setaria viridisBrachypodium distachyon34.2246.7886.7218forward
CNT30581232Setaria viridisEchinochloa crusgalli27.3224.494.25174forward
CNT30604352Setaria viridisOryza punctata18.5220.4997.46118forward
CNT30556732Setaria viridisPanicum hallii27.6322.5696.02176forward

Expression of CNT30671994

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVVWSGSLRWVAQLLSGPLPVAAACTAKPRKATMARPKTSL*

>peptide 2 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDPSSHHTLSLITK*

>peptide 3 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

Sequence

>CNT30671994
ACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTAT
CGGATCCATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAAT
TAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGA
GGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCCGAAGACCTCGCTGTA
GGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGC
TCGAACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACCGCGCCGG
GGAACCAGAGCGGCCGGTGGTGGTGGTGTGTGGCGTG