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Detailed information on CNT30562744


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Actinidia chinensisSetaria viridis21.5829.0785.07134forward
CNT30587569Actinidia chinensisMusa acuminata16.5930.7588.35103forward
CNT30244332Actinidia chinensisAvena sativa22.5417.2287.14140forward
CNT30131950Actinidia chinensisLolium perenne16.7520.3185.58104forward
CNT30680618Actinidia chinensisTriticum urartu21.113.6387.79131forward
CNT30596509Actinidia chinensisOryza meridionalis21.18.6289.31131forward
CNT30360911Actinidia chinensisLactuca sativa17.7124.1883.64110forward
CNT30120689Actinidia chinensisCitrus clementina49.2826.8979.74306forward
CNT30147934Actinidia chinensisBrachypodium distachyon21.134.3887.02131forward
CNT30102551Actinidia chinensisOryza rufipogon21.114.1589.31131forward
CNT30556512Actinidia chinensisPanicum hallii21.5827.6384.33134forward
CNT30551395Actinidia chinensisOryza brachyantha22.0615.8287.59137forward
CNT3039307Actinidia chinensisMarchantia polymorpha16.7531.3383.65104forward

Expression of CNT30562744

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VTFVHCCAGCPTEMRKAIFTVGCPPRFPTTTILIP*

>peptide 2 (56 aa)
MISKNEKKKSYGKLQHFCLNGQISYFYKTCTESQTQPFIHTSFHLSSKIIKIKGKT*

>peptide 3 (39 aa)
YVCSLLRRLSNRDEKSNIHCWLPAPVSHHHNINSLIYDF*

>peptide 4 (44 aa)
MVVWRGSLKWVTQLLRGPFPVTAAWTAKPRKPTMARRACLISAS*

Sequence

>CNT30562744
GTTACGTTTGTTCATTGTTGCGCAGGTTGTCCAACCGAGATGAGAAAAGCAATATTCACTGTTGGTTGCCCGCCCCGGTTTCCCACCACCACAATATTAA
TTCCCTGATATATGATTTCTAAAAATGAAAAGAAAAAATCTTATGGCAAATTACAACATTTCTGCTTAAACGGTCAAATATCATATTTTTACAAGACGTG
CACAGAGTCACAGACACAACCATTCATTCATACAAGTTTTCACCTCTCATCCAAGATAATAAAAATAAAGGGCAAAACGTAACAGCTCAAGAGAGAACGT
TATCGATAATGGTGGTGTGGAGGGGGTCGCTCAAGTGGGTGACCCAGTTGTTGAGGGGACCCTTTCCGGTGACGGCAGCCTGGACGGCAAAGCCGAGGAA
ACCGACCATGGCGAGGCGAGCGTGTTTGATCTCCGCCAGTTGAAGGGTGGCCAGCCCCAACGGGTCGAAGAATTTTCCGCCGGGGTATAGCCGCTTCTCC
TCGTCGAGCTCGGCGTTCCTCTGGAACTCTATGTAGCCGATCACGAGGACCTCGATCCATATCAGGGTGGTTATGGAGAAGGGGAGGGGTTGGCCCAGGT
AGGATGACCCTTCTATTAGCT