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Detailed information on CNT30360911


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Lactuca sativaOryza sativa21.3215.3282.4797forward
CNT30640430Lactuca sativaNymphaea colorata31.6531.3781.25144forward
CNT30513329Lactuca sativaJuglans regia31.2122.1285.21142forward
CNT30375654Lactuca sativaArabidopsis thaliana26.1524.5981.51119forward
CNT30526506Lactuca sativaPhaseolus vulgaris37.3614.3582.94170forward
CNT30485914Lactuca sativaOlea europaea40.6623.184.86185forward
CNT30502928Lactuca sativaNicotiana attenuata32.0941.3682.19146forward
CNT30708177Lactuca sativaGlycine max36.0415.5983.54164forward
CNT30289853Lactuca sativaTriticum aestivum21.3212.4283.5197forward
CNT30221234Lactuca sativaHordeum vulgare21.3216.1983.5197forward
CNT30562744Lactuca sativaActinidia chinensis24.1817.7183.64110forward
CNT30587569Lactuca sativaMusa acuminata16.9222.9984.4277forward
CNT30659938Lactuca sativaTriticum dicoccoides21.3218.182.4797forward
CNT30219415Lactuca sativaKalanchoe fedtschenkoi25.0536.5483.33114forward
CNT3067780Lactuca sativaLeersia perrieri21.3220.2982.4797forward
CNT30680618Lactuca sativaTriticum urartu21.3210.0982.4797forward
CNT30370757Lactuca sativaOryza glumipatula21.3220.3482.4797forward
CNT30428948Lactuca sativaPapaver somniferum29.457.9683.58134forward
CNT30120689Lactuca sativaCitrus clementina31.2112.4884.51142forward
CNT3036109Lactuca sativaCucumis melo29.8913.0984.56136forward
CNT30147934Lactuca sativaBrachypodium distachyon21.3225.4682.4797forward
CNT30102551Lactuca sativaOryza rufipogon21.3210.4882.4797forward
CNT30580858Lactuca sativaEchinochloa crusgalli21.3216.4183.5197forward
CNT30604352Lactuca sativaOryza punctata22.8618.0682.69104forward
CNT30551395Lactuca sativaOryza brachyantha21.3211.283.5197forward
CNT30725365Lactuca sativaLupinus angustifolius28.798.0982.44131forward

Expression of CNT30360911

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MARRACLISASCRMAFFSGSAAKIKLSVSLKLNVADDQNLNPDQSGDREWEWLTKVR*

>peptide 2 (91 aa)
ILFRLICQKLQTLQDRRNHKTTSVMIYIYQRKLQKTILREEAKGVKDSSVKWITQMSNPVVERTFSGGRCLNGKPKESHHGKTGMLDLRQL*

Sequence

>CNT30360911
ATATTGTTCCGCTTGATTTGTCAAAAGTTACAAACTTTACAAGATAGACGTAATCATAAAACTACATCGGTGATGATATATATTTATCAACGGAAACTCC
AAAAAACGATTTTACGAGAAGAAGCCAAAGGTGTCAAGGATAGTAGTGTGAAGTGGATCACTCAAATGAGTAACCCAGTTGTTGAGAGGACCTTTTCCGG
TGGCCGCTGCTTGAACGGCAAACCCAAGGAATCCCACCATGGCAAGACGGGCATGCTTGATCTCCGCCAGTTGTAGGATGGCTTTCTTCTCGGGGTCGGC
GGCTAAGATCAAGCTCAGCGTTTCTTTGAAACTCAATGTAGCCGATGATCAAAACCTCAATCCAGATCAAAGTGGTGATAGAGAATGGGAGTGGTTGACC
AAGGTACGATGATCCATCGATTAGTTCAACCTAAAGAAAAACAATACAAGAAAAT