« Back to Oryza barthii search


Detailed information on CNT30577064


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Oryza barthiiOryza sativa85.7399.3996.49655forward
CNT30672312Oryza barthiiSetaria viridis18.8531.2493.06144forward
CNT30520570Oryza barthiiSetaria italica34.1626.6994.25261forward
CNT30640553Oryza barthiiNymphaea colorata29.5828.0784.07226forward
CNT30513329Oryza barthiiJuglans regia28.834.2780.45220forward
CNT30289853Oryza barthiiTriticum aestivum35.2134.4492.57269forward
CNT30221568Oryza barthiiHordeum vulgare34.1624.9385.44261forward
CNT30386996Oryza barthiiTriticum turgidum28.840.6790220forward
CNT30562751Oryza barthiiActinidia chinensis18.3233.6585140forward
CNT30587569Oryza barthiiMusa acuminata10.7324.4890.2482forward
CNT30554457Oryza barthiiOryza glaberrima53.1433.81100406forward
CNT30436081Oryza barthiiAegilops tauschii28.1442.0791.16215forward
CNT30243799Oryza barthiiAvena sativa34.1640.7290.04261forward
CNT30659938Oryza barthiiTriticum dicoccoides27.6239.3792.42211forward
CNT30453511Oryza barthiiSaccharum spontaneum35.2151.0494.05269forward
CNT30131950Oryza barthiiLolium perenne15.3122.8590.6117forward
CNT30229721Oryza barthiiAnanas comosus30.19.888.26230forward
CNT3067780Oryza barthiiLeersia perrieri20.4232.6492.95156forward
CNT30680618Oryza barthiiTriticum urartu35.2127.9992.19269forward
CNT30338970Oryza barthiiEragrostis tef23.0433.0290.91176forward
CNT30620949Oryza barthiiCajanus cajan29.582179.65226forward
CNT30596639Oryza barthiiOryza meridionalis75.1334.6896.86574forward
CNT30370789Oryza barthiiOryza glumipatula53.2729.5899.26407forward
CNT30328621Oryza barthiiAsparagus officinalis10.7327.5285.3782forward
CNT30147934Oryza barthiiBrachypodium distachyon22.5145.1494.19172forward
CNT30102551Oryza barthiiOryza rufipogon72.7760.0495.86556forward
CNT30581456Oryza barthiiEchinochloa crusgalli34.1645.3996.93261forward
CNT30117066Oryza barthiiOryza nivara58.6465.6995.09448forward
CNT30604352Oryza barthiiOryza punctata70.6893.7584.63540forward
CNT30556512Oryza barthiiPanicum hallii14.2722.4794.5109forward
CNT30551395Oryza barthiiOryza brachyantha34.1630.1495.4261forward

Expression of CNT30577064

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 2 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 3 (50 aa)
MTSTSIQISVEIENGSGCPRNVLAAAATDDAMAAPLLLLLLRECVGGGEGG

>peptide 4 (54 aa)
MVVWSGSLRGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDANPSGSK*

>peptide 5 (71 aa)
DTYYNFVNINTCQVKSMQCACVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

Sequence

>CNT30577064
AGACACCTATTATAACTTTGTTAATATCAATACATGTCAGGTAAAGTCTATGCAGTGTGCATGTGTGCATTCACAGTCACACTCACTTAGTCAAATACCA
AGATCGATCGATCGATGTACAAGTGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACC
CAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCG
AACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTC
GCTGAGGGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGC
TCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACT
CGATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGAACGTGCTCGCCGCCGCTGCCACCGACGA
CGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATGTGTGGGTGGTGGTGAGGGGGGG