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Detailed information on CNT30596509


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Oryza meridionalisSetaria viridis14.8738.3794.25226forward
CNT30520322Oryza meridionalisSetaria italica16.3222.0894.35248forward
CNT30640553Oryza meridionalisNymphaea colorata14.0126.4687.32213forward
CNT30708158Oryza meridionalisGlycine max16.2529.7983.81247forward
CNT30287394Oryza meridionalisTriticum aestivum11.9721.7495.6182forward
CNT30221568Oryza meridionalisHordeum vulgare16.2523.5990.28247forward
CNT30387274Oryza meridionalisTriticum turgidum8.0927.4696.75123forward
CNT30562744Oryza meridionalisActinidia chinensis8.6221.189.31131forward
CNT30587569Oryza meridionalisMusa acuminata7.9636.1292.56121forward
CNT30236263Oryza meridionalisBrassica oleracea10.2632.182.69156forward
CNT30244332Oryza meridionalisAvena sativa11.9722.3993.41182forward
CNT30262014Oryza meridionalisBrassica rapa8.4227.8981.25128forward
CNT30132672Oryza meridionalisLolium perenne14.8740.588.94226forward
CNT3042238Oryza meridionalisChlamydomonas reinhardtii4.6722.4788.7371forward
CNT3067780Oryza meridionalisLeersia perrieri8.0325.5297.54122forward
CNT30340460Oryza meridionalisEragrostis tef16.2529.0693.52247forward
CNT30370757Oryza meridionalisOryza glumipatula26.3283.8696.5400forward
CNT30105722Oryza meridionalisOryza longistaminata7.6340.9992.24116forward
CNT30328621Oryza meridionalisAsparagus officinalis9.2847.3286.52141forward
CNT30147934Oryza meridionalisBrachypodium distachyon10.9243.5795.78166forward
CNT30102551Oryza meridionalisOryza rufipogon29.3448.1696.19446forward
CNT30581265Oryza meridionalisEchinochloa crusgalli11.5833.7897.16176forward
CNT30496270Oryza meridionalisDigitaria exilis15.223.490.91231forward
CNT30117066Oryza meridionalisOryza nivara25.7257.3395.91391forward
CNT30604352Oryza meridionalisOryza punctata30.4680.3889.2463forward

Expression of CNT30596509

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MYRGVSYTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

>peptide 2 (52 aa)
MISPALFLARFWSSESSSNCRNVLAAAATDDAMAALLLLLLLLRECVGGGEGG

>peptide 3 (58 aa)
DRCTSGCINSSSGVHILQITTMQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 4 (61 aa)
MVVWSGSLRWVAQLLRGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGYDDPSTSST*

>peptide 5 (34 aa)
MTSPLSIPSQLARHHKTKPRARTHTNARKRIDPV*

>peptide 6 (35 aa)
SIDVQVDALIHHRVFIYYKSPPCKSPLTTNPALLI*

Sequence

>CNT30596509
TCGATCGATGTACAAGTGGATGCATTAATTCATCATCGGGTGTTCATATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCC
TAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACAC
CAACGCACGCAAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGC
TGAGGTGGGTGGCCCAGTTGTTGAGGGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGAT
CTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTACGACGACCCATCCACCAGCTCCACCTGAAAAACATCATCGGACCATTCCTACGTCAGTGTCATC
GTCCTCGTCCGCGGCGGCGGCGACATGTGTAGTAATCAGGGTTTTAAATATTCAGCTATAGCTGTTTGAGAAAGATATAGCTATTTGCTCTCATGTACAA
TCTAGTCGTAGCTGCCACTATTTTGAGAAGGCTAATCGCTAAATAGTTTAGCCCACTATTTGAAAGTGAGAAATGACCTGGGTTTGAAGTTTTACTCTTT
CTAATTATTTGATATTAGGTCATTTTTTAATGTTTGTGTGTTTTTTTAGCAAATTTCACAAAACTACATGTTTTATGATTTAAGTTGCAGAAAACCACAC
ACATTTTGATACTTGGCACTTAAGTACATATATTTTGGTAGTTTAGTTTCACGAAACCACACTATCGATGGATTCACCCGTGAGATGACATGGTTGTTCC
ATCTAAGATGAGAACGTGACATCCTATTAATTTTGTGCGATGGCTGGTAATATGATGCCATGTCTTCGTTCTGGGTGAAACAGTCACGTCATCTCGCGGG
TGAATCCATTCATTGATAGTGTGGTTTCGTGAAACTACGCTACCAAAATATATGTACTTAATTGTCAAGTGTCAAAGTGTGTGTGGTTTTCTGCAACTTA
GACCACAAAACGTGTAGTTTTGTGAAATTTACTCTTTTTTTTTAAACGCTGGTAGTAATGTATAGGGGAGTATCGTATACCTTGCCGGCGTCTTGCCAGG
TGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGGAGGCCGAA
CACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGGTTCTGGTCC
AGCGAGTCCAGCTCGAACTGCAGGAACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCTTCTCCTCCTTCTTCTTCTTCTTCGAGAATGTG
TGGGTGGTGGTGAGGGGGGG