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Detailed information on CNT30428948


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 3e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Papaver somniferumOryza sativa8.6723.0680.82146forward
CNT30513329Papaver somniferumJuglans regia7.6620.0982.95129forward
CNT30375654Papaver somniferumArabidopsis thaliana7.7226.8683.85130forward
CNT30502928Papaver somniferumNicotiana attenuata8.1939.0986.23138forward
CNT30221234Papaver somniferumHordeum vulgare7.4821.0480.95126forward
CNT30587569Papaver somniferumMusa acuminata6.2431.3485.71105forward
CNT30244083Papaver somniferumAvena sativa7.4825.7180.95126forward
CNT30213985Papaver somniferumHelianthus annuus8.0225.4283.7135forward
CNT30360911Papaver somniferumLactuca sativa7.9629.4583.58134forward
CNT30370757Papaver somniferumOryza glumipatula8.6730.6180.82146forward
CNT30147934Papaver somniferumBrachypodium distachyon8.1435.9680.29137forward
CNT30604352Papaver somniferumOryza punctata8.9726.2280.79151forward

Expression of CNT30428948

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MVGYLVIRYFSSYGCTSTRQWIISTEVKNRSKLKIYLHLNLPQEMYFSSNFILTVAGHNHELKISPVKVRLLHICCLNSKMKTYNLTL*

>peptide 2 (57 aa)
MVNGSGSPKYEDPSINSTCTIAKAIRKKEKKRRRYGDAFMKQTYTDTFIVQQLQEAA*

>peptide 3 (43 aa)
MSSHSRNLCNPKTSAYGWNGVDFTSESSVLVPITSPAKFFAKF*

Sequence

>CNT30428948
ATAATTCATTACCCTTTCCGAGTTAAAAAAAATAAATGATCACTTTATCCTAATCAAACAAGTCTTCCGTTGATTGGATTTGGGATATCACTAAATAAAT
TAATCAAGAAATACAAATATATACTTAGGCAATGGAATTGAAGCCTAATGATTTCCAAATATATTAGAATCTTTACATGACAGAGGTGCATAAGATGAAA
GTCTAATGTGCAAACATTGAGGAACAGAAGAAACTCAAATTTAAGATGAGGAGAAAGTGTCAATGATGGTTGTGTGAAGTGGGTCGCTCAAATGGGTAGC
CCAGTTGTTAAGTGGACCTTTGCCGGTAGCTGCGGCTTGAACAGCAAAACCCAAGAAGCCAACCATGGCTAGACGAGCGTGCTTGATCTCGGCTAATTGA
AGTCTTTCCTTTGCCTCAGGGTCAGCTGCTAAGCCGAGGGGATCGAAGTGATGGTGAATGGAAGTGGAAGCCCCAAGTATGAAGACCCATCAATCAATTC
TACCTGCACAATAGCCAAAGCAATTAGGAAAAAAGAAAAGAAAAGAAGAAGATATGGTGACGCTTTTATGAAGCAAACTTATACAGACACTTTCATCGTT
CAGCAGCTCCAAGAGGCTGCTTGAATATGGTTGGTTACTTGGTTATCAGGTATTTTAGTTCCTACGGATGCACATCTACCAGACAATGGATCATTTCTAC
CGAAGTAAAAAATCGATCTAAGTTGAAAATTTATTTACATCTTAATTTACCGCAAGAAATGTATTTTAGTTCTAATTTTATCTTGACTGTAGCCGGACAC
AACCACGAGCTAAAGATTAGTCCAGTTAAGGTTAGGCTACTACATATCTGTTGCTTAAACAGCAAGATGAAAACCTACAATCTCACATTGTAAGAGAGTA
AGATCTACACTTGATTAAAATACGAGATTTTCATCGAAATGCAAAAACATGAGCAGTAGTACGAAATAAAGTTGTTTCCTGTTACATAATAGCATGAAAT
GGTTTTTTTACTATCAAGAAATTTGAAATTTTAAGCATACCTTTCCAGCGTCTTGCCATGTGACACCAGTGAGTGATTCAACAGCGAGAGCACCGAGTGT
AGCAAGCATAGCCCATCTACCATGAATGAGTTCACATTCACGGAATCTTTGTAATCCAAAGACTTCAGCATATGGTTGGAATGGAGTTGATTTCACGTCA
GAGTCTTCAGTTCTAGTTCCAATAACCTCACCAGCAAAGTTCTTTGCTAAATTTTGATCCAAACCATCCAAATCAAATTGCAAGTATTCAGCTGGCTTTC
CTAGACCAAAAGGATCGAACCCGTAGTCGCCGACTAACGATCCGTCTAAGTATTCGGGTGCTTTTGCACCAGGAAACCAAAGTGGACGATCGGGAACTAC
TGATTTAGATACCTTTTTTGGTGCTGCTTTTTTCTTTCCGAATCCAAAACGGGCAGTGATTTTGCCTCCGTTGGAATGCACATTCTGCAAATGTGTTCCT
AGAAAGGATGAGGTTGCAGCTGCGGTGGTTGCGGCCATGGTGATGGTTAAGGCTAACGTTGGCTAGGTAGTATTGTGGTATGAATGGGAGGGATGAGTGA
AGAAGAATGCTAATGAATTGATGGGGTTATATTTTTTGTGATTCAGAATGGGTTTCTTTTAAGGTTTAATTGGTTTATCCATGA