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Detailed information on CNT30680618


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 5e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Triticum urartuOryza sativa33.7149.1792.9324forward
CNT30520570Triticum urartuSetaria italica33.5132.9291.93322forward
CNT30640553Triticum urartuNymphaea colorata26.8532.0585.27258forward
CNT30513329Triticum urartuJuglans regia29.4544.0880.21283forward
CNT30526506Triticum urartuPhaseolus vulgaris31.0125.1580.54298forward
CNT30485914Triticum urartuOlea europaea28.8234.5880.14277forward
CNT30708177Triticum urartuGlycine max31.0128.3382.55298forward
CNT30179479Triticum urartuSecale cereale29.4540.998.59283forward
CNT30289853Triticum urartuTriticum aestivum78.0496.0398.93750forward
CNT30387274Triticum urartuTriticum turgidum29.7663.8499.65286forward
CNT30562744Triticum urartuActinidia chinensis13.6321.187.79131forward
CNT30587569Triticum urartuMusa acuminata12.3835.5289.92119forward
CNT30436081Triticum urartuAegilops tauschii31.4359.196.69302forward
CNT30243799Triticum urartuAvena sativa35.2852.8994.4339forward
CNT30659169Triticum urartuTriticum dicoccoides35.4843.8399.71341forward
CNT30452520Triticum urartuSaccharum spontaneum33.5121.4891.93322forward
CNT30133575Triticum urartuLolium perenne25.2938.2192.18243forward
CNT3013737Triticum urartuZea mays11.3423.3991.74109forward
CNT30229721Triticum urartuAnanas comosus31.0112.6988.59298forward
CNT30219415Triticum urartuKalanchoe fedtschenkoi21.6466.6780.29208forward
CNT3067780Triticum urartuLeersia perrieri11.6523.4397.32112forward
CNT30338969Triticum urartuEragrostis tef17.5927.393.49169forward
CNT30620949Triticum urartuCajanus cajan31.0127.780.87298forward
CNT30360911Triticum urartuLactuca sativa10.0921.3282.4797forward
CNT30370757Triticum urartuOryza glumipatula17.4835.2296.43168forward
CNT30147934Triticum urartuBrachypodium distachyon23.3158.7992.86224forward
CNT30102551Triticum urartuOryza rufipogon20.8121.694.5200forward
CNT30577064Triticum urartuOryza barthii27.9935.2192.19269forward
CNT30604352Triticum urartuOryza punctata21.8536.4691.9210forward
CNT30556732Triticum urartuPanicum hallii20.292586.67195forward
CNT30551395Triticum urartuOryza brachyantha35.1739.0392.6338forward

Expression of CNT30680618

Peptides detected in this lncRNA

>peptide 1 (70 aa)
IKSPLVHILQITKSQQLSYVIRPALLNKGSLRYPLIHHSSYTKRKARSLHGRAFVHFAAELTEIARPPTT*

>peptide 2 (61 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSAARPSGSK*

>peptide 3 (47 aa)
MYPITSTSIQISVVSVNGSGCPRFWSRESTSYCRYSAGFPRPKGSKP*

>peptide 4 (32 aa)
MRPFCGAGSASRVPRNALAAAATDEAMAARSS*

Sequence

>CNT30680618
GCATTAAGTCACCATTGGTTCATATTTTACAAATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTACTCAACAAAGGATCTTTGCGATA
CCCTCTCATCCATCACTCGTCATATACAAAACGAAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGCAGCCGAGCTGACAGAAATTGCTCGA
CCACCGACCACTTAAGAGGAGCCCAAGGTGTCAAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGCGGCCCCTTGCCGGTGG
CGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTCTCCGGGTCCGCCGC
GAGACCCAGCGGGTCGAAGTAGGAGCCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACC
TCGATCCAGATCAGCGTGGTGAGCGTGAACGGCAGCGGCTGCCCCAGGTTCTGGTCCAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCGA
GGCCGAAGGGGTCGAAGCCGTAGTCGCCGACGAGCGTGCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGG
CGCCTTGGCCTTCTTCGGCGGGGCCTTCTTCTTGCCGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTCCCGAGG
AACGCGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTCGCTCCTCCTAGCTTGTCCTCCTCGGCCTTTGCGTGCGTTGAGGTGGCGGGTGGTGGT
GCTGTGCTGTGTGGTGTGTGGCCGTCACGGGGTACAAATAGGGTGCTTATAAGAAATTCCC