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Detailed information on CNT30403468


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Beta vulgarisSetaria italica37.4751.3380290forward
CNT30315993Beta vulgarisCorylus avellana50.6539.0880.36392forward
CNT30549166Beta vulgarisIpomoea triloba66.1576.1977.54512forward
CNT30516897Beta vulgarisJuglans regia37.2132.5882.29288forward
CNT30616460Beta vulgarisSesamum indicum49.4826.6980.68383forward
CNT30267761Beta vulgarisChenopodium quinoa100.3995.2280.57777forward
CNT3021333Beta vulgarisCitrullus lanatus57.4975.1778.43445forward
CNT30489027Beta vulgarisOlea europaea24.2954.3485.11188forward
CNT30506121Beta vulgarisNicotiana attenuata45.4885.0280.68352forward
CNT3091337Beta vulgarisSolanum tuberosum40.1838.1181.67311forward
CNT30308418Beta vulgarisTriticum aestivum24.0325.883.87186forward
CNT30400271Beta vulgarisTriticum turgidum22.0934.5583.63171forward
CNT30559890Beta vulgarisActinidia chinensis51.0357.8381.01395forward
CNT30508941Beta vulgarisSolanum lycopersicum37.0872.2981.88287forward
CNT30171519Beta vulgarisTrifolium pratense26.2359.7180.79203forward
CNT30443444Beta vulgarisAegilops tauschii22.2218.4782.56172forward
CNT30256655Beta vulgarisAvena sativa24.8142.7684.9192forward
CNT30311670Beta vulgarisCamelina sativa59.1783.1279.26458forward
CNT30468674Beta vulgarisSaccharum spontaneum42.1235.5581.6326forward
CNT30216750Beta vulgarisKalanchoe fedtschenkoi37.659.3981.44291forward
CNT3067990Beta vulgarisLeersia perrieri22.6145.9383.43175forward
CNT30205421Beta vulgarisHelianthus annuus31.6545.9781.63245forward
CNT30713436Beta vulgarisMalus domestica golden40.5797.5279.3314forward
CNT30625502Beta vulgarisDaucus carota54.7852.0981.84424forward
CNT30688581Beta vulgarisTriticum urartu21.5828.7484.43167forward
CNT30341751Beta vulgarisEragrostis tef31.0149.5981.25240forward
CNT30596739Beta vulgarisOryza meridionalis23.1327.5483.24179forward
CNT30354603Beta vulgarisLactuca sativa39.0244.6179.8302forward
CNT30154742Beta vulgarisPrunus persica44.444181.4344forward
CNT30408809Beta vulgarisPapaver somniferum36.6932.8783.8284forward
CNT30642028Beta vulgarisCannabis sativa42.5164.2680.24329forward
CNT3027877Beta vulgarisTheobroma cacao38.6375.782.61299forward
CNT3051605Beta vulgarisAmborella trichopoda45.6153.2478.47353forward
CNT30121049Beta vulgarisCitrus clementina51.4236.7880.65398forward
CNT3035176Beta vulgarisCucumis melo39.0254.9179.47302forward
CNT30330867Beta vulgarisDioscorea rotundata36.5639.1483.04283forward
CNT30149986Beta vulgarisBrachypodium distachyon29.8425.7582.68231forward
CNT30103004Beta vulgarisOryza rufipogon30.6223.7780.59237forward
CNT30577473Beta vulgarisOryza barthii23.1332.8482.12179forward
CNT30497905Beta vulgarisDigitaria exilis45.9939.4280.62356forward
CNT30551544Beta vulgarisOryza brachyantha26.129.0682.18202forward
CNT30335475Beta vulgarisCynara cardunculus48.8429.184.39378forward
CNT3049385Beta vulgarisCucumis sativus40.4439.5280.83313forward

Expression of CNT30403468

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MWGCMMAKWGCTMATWGCMMATWGCTMATWGCMTAKWGCKLVR*

>peptide 2 (37 aa)
MSEVWAKQVTWRHHPVMVRCSSNGGTCRRHPKFQTFHI

Sequence

>CNT30403468
CTGTAGTTTGGAGAGGTAGGACTGTAAGGACTGGAAGGTGATATTCTTGGACTGCTTGGAGAGTATGCAAGTGAGGGACTGTATTTGGCTGACGGATTAT
AGCTTGGAGATGTAGGACTATAGCTTGGAGATGTAGGACTATAGCTAGGAGACGTGGGACTATATCCTGGGGAAGTAGGACTGTAAGCAGGTGAAGTCGG
ACTATACGAAGGCGATGTGGGGCTGTATGATGGCGAAGTGGGGCTGTACGATGGCGACGTGGGGCTGTATGATGGCGACGTGGGGCTGTACGATGGCGAC
GTGGGGCTGTATGACGGCGAAGTGGGGCTGTAAGCTGGTGAGGTAGGGCTGTATGCCGGTGAGGTAGGGCTGTAAGCTGGAGAAGTGGGGCTGTAGCTCG
GGGAAGTGGGAGAGTATGAAGGGCTCGTGGGTGAATATGCTGGGCTTGTTGGACTGTACCCAGGAGACGAAGGACTGTAAGTCGGCGAGGTAGGGCTATA
TCCAGGAGAAGTAGGGCTATATCCGGGTGAAGTAGGGCTATATCCCGGTGAAGTGGGGCTGTATCCAGGTGATCCCCCACCATAATTAGGTGATGCAGCA
GGAGAGAAGGCCATGTTAGTAACAAAGGGAGAAAAGGCAGCATTCTCTGAGATGGGTGAATGTCGGAGGTTTGGGCTAAACAAGTAACTTGGAGACATCA
TCCCGTCATGGTAAGGTGTTCCAGCAATGGGGGAACGTGCAGGCGTCATCCCAAATTCCAAACCTTCCACATAA