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Detailed information on CNT30625810

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30516897	Daucus carota	Juglans regia	21.09	16.18	88.11	143	forward
CNT30269270	Daucus carota	Chenopodium quinoa	39.38	50.86	82.02	267	forward
CNT30708121	Daucus carota	Glycine max	31.56	32.23	81.78	214	forward
CNT30559890	Daucus carota	Actinidia chinensis	45.58	45.24	80.58	309	forward
CNT30235097	Daucus carota	Brassica oleracea	45.58	38.58	79.29	309	forward
CNT30205370	Daucus carota	Helianthus annuus	45.43	47.17	80.84	308	forward
CNT30476941	Daucus carota	Arabidopsis halleri	38.5	32.58	80.84	261	forward
CNT30620243	Daucus carota	Cajanus cajan	11.8	24.1	86.25	80	forward
CNT30154777	Daucus carota	Prunus persica	33.78	28.62	80.79	229	forward
CNT30408809	Daucus carota	Papaver somniferum	47.2	37.04	82.81	320	forward
CNT30573979	Daucus carota	Vitis vinifera	46.9	54.55	83.33	318	forward
CNT3035176	Daucus carota	Cucumis melo	33.48	41.27	81.06	227	forward
CNT30497905	Daucus carota	Digitaria exilis	41	30.79	82.01	278	forward
CNT30558075	Daucus carota	Panicum hallii	38.35	32.95	81.54	260	forward
CNT3049385	Daucus carota	Cucumis sativus	23.3	19.95	83.54	158	forward

Expression of CNT30625810

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLVSWGYNQVKQGYTQERRGCTQERRGCTQVKRGYNLEKMQEKIPCHQHREKIVHQ*

>peptide 2 (81 aa)
MMEKLDCMKVRLGCMMGRLGCRTGSSGCRTERSGCRMERWGCRTERWGCKQVRWGCRQVRWGCSLGRWGCSWGRWGCSWGR*

Sequence

>CNT30625810
TGGTGATAGTCTTGGACTGCTCGGGGAATATGCCAGGGAGGGGCTGTACTTTGCAGATGAAGGGTTGTAGCTTGGAGATGTAGGACTATAGCTTGGAGAT
GTGGGACTGTAGCTCGGCGATGTGGGACTGTATGCAGGAGAAGTAGGACTATATGATGGAGAAGTTGGACTGTATGAAGGTGAGGTTGGGCTGTATGATG
GGGAGGTTGGGCTGTAGGACGGGGAGCTCGGGCTGTAGGACGGAGAGGTCGGGCTGTAGGATGGAGAGGTGGGGCTGTAGGACGGAGAGGTGGGGCTGTA
AGCAGGTGAGGTGGGGCTGTAGGCAGGTGAGGTGGGGCTGTAGCTTGGGGAGGTGGGGCTGTAGCTGGGGGAGGTGGGGCTGTAGCTGGGGGAGGTAGGG
GAGTAGGATGGACTTGTCGGTGAATATGTAGGGCTACTAGGACTATATCCTGGAGAGCTTGGACTATATGTTGGTGAGCTGGGGCTATAACCAGGTGAAG
CAGGGCTATACCCAGGAGAGGCGGGGCTGTACCCAGGAGAGGAGGGGCTGTACCCAGGTGAAGAGGGGCTATAACTTGGAGAAGATGCAGGAGAAAATCC
CATGCCACCAACATAGGGAGAAAATTGTGCATCAGTAATGGGTGACAGCCGAAGGTTTGGGCTTAGCATGTAGTTTGG