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Detailed information on CNT30591924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Musa acuminataEucalyptus grandis98.8789.0278.18527forward
CNT30316008Musa acuminataCorylus avellana28.5223.2484.87152forward
CNT30516792Musa acuminataJuglans regia95.557.1979.57509forward
CNT30376379Musa acuminataArabidopsis thaliana51.5936.9680.36275forward
CNT30500604Musa acuminataCoffea canephora59.4751.5482.33317forward
CNT30616515Musa acuminataSesamum indicum70.7355.9380.11377forward
CNT30269232Musa acuminataChenopodium quinoa62.8552.6780335forward
CNT3021339Musa acuminataCitrullus lanatus64.5454.2680.23344forward
CNT30727660Musa acuminataCorchorus capsularis92.1289.7680.65491forward
CNT30378927Musa acuminataManihot esculenta94.9381.7481.62506forward
CNT30490956Musa acuminataOlea europaea58.9174.7681.21314forward
CNT3042412Musa acuminataPrunus dulcis74.1153.3181.01395forward
CNT3091361Musa acuminataSolanum tuberosum49.3435.7880.23263forward
CNT30235097Musa acuminataBrassica oleracea55.7237.0881.14297forward
CNT30508941Musa acuminataSolanum lycopersicum60.7981.6179.01324forward
CNT30311681Musa acuminataCamelina sativa39.429.2583.81210forward
CNT30263459Musa acuminataBrassica rapa58.3557.4980.39311forward
CNT30468644Musa acuminataSaccharum spontaneum48.7827.6381.54260forward
CNT30205370Musa acuminataHelianthus annuus62.2950.8481.33332forward
CNT30476941Musa acuminataArabidopsis halleri65.6743.780.29350forward
CNT30354661Musa acuminataLactuca sativa58.5456.1281.09312forward
CNT30573855Musa acuminataVitis vinifera91.7481.2382489forward
CNT3051605Musa acuminataAmborella trichopoda66.0453.0982.95352forward
CNT30121049Musa acuminataCitrus clementina91.5645.179.1488forward
CNT3035176Musa acuminataCucumis melo73.3671.0979.28391forward
CNT30330871Musa acuminataDioscorea rotundata60.7944.8180.56324forward
CNT30584421Musa acuminataEchinochloa crusgalli43.7128.9182.4233forward
CNT30497905Musa acuminataDigitaria exilis47.6528.1381.5254forward
CNT30558075Musa acuminataPanicum hallii36.9624.9782.23197forward
CNT30335477Musa acuminataCynara cardunculus54.4176.3279.31290forward
CNT3049385Musa acuminataCucumis sativus57.7938.8980.52308forward

Expression of CNT30591924

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MMVKSGYMKVMSDYRKVMLDYRMVRLGCRQEMLDCRLGKSDCKLEK*

>peptide 2 (45 aa)
CNLEMIDRMDWMVTALDCLENKQAKDCTLLRQDCNLEMWGYNLGM*

Sequence

>CNT30591924
TGTAATTTGGAGATGATTGACCGTATGGACTGGATGGTGACAGCCTTGGACTGCTTGGAGAATAAGCAAGCGAAGGACTGTACTTTGCTGAGGCAGGATT
GTAACTTGGAGATGTGGGGCTATAACTTGGGGATGTAGGACTATAGCTAGGAGATGTTGGACTGTATCCCGGAGAAGTTGGGCTATAGGCAGGTGAGGTA
GGACTGTATGATGGTGAAGTCGGGCTATATGAAGGTGATGTCGGACTATAGGAAGGTGATGTTGGACTATAGGATGGTGAGGTTGGGCTGTAGGCAGGAG
ATGTTGGACTGTAGGCTGGGGAAGTCGGACTGTAAACTGGAGAAGTAGGGCTGTAGCTTGGCGAAGTAGGACTGTAACTGGGGGAAGTTGGGCTGTAACT
GGGGGAAGTAGGACTATAAGTAGGAGATGTAGGGCTATAACTGGGAGAGGTCGGGCTGTAGCTGGGAGAAGTTGGCGAATATGATGGACTTGTCGGAGAG
TAAGCAGGACTTGTAGGACTATATCCAGGAGAG