« Back to Saccharum spontaneum search


Detailed information on CNT30468540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269263Saccharum spontaneumChenopodium quinoa50.1256.9682.03434forward
CNT3021339Saccharum spontaneumCitrullus lanatus46.6563.7279.21404forward
CNT30727660Saccharum spontaneumCorchorus capsularis31.4149.7381.99272forward
CNT30506119Saccharum spontaneumNicotiana attenuata25.8756.1481.7224forward
CNT30193210Saccharum spontaneumSecale cereale20.7984.1185.56180forward
CNT30308418Saccharum spontaneumTriticum aestivum53.8164.6385.84466forward
CNT30400472Saccharum spontaneumTriticum turgidum53.4646.4485.1463forward
CNT30559890Saccharum spontaneumActinidia chinensis44.5756.5280.31386forward
CNT30145737Saccharum spontaneumMedicago truncatula26.2136.8581.5227forward
CNT30443444Saccharum spontaneumAegilops tauschii48.8545.4484.87423forward
CNT30668234Saccharum spontaneumTriticum dicoccoides19.7529.0888.3171forward
CNT30312353Saccharum spontaneumCamelina sativa28.2959.7684.49245forward
CNT3079663Saccharum spontaneumBrassica juncea31.7651.6981.09275forward
CNT30141877Saccharum spontaneumLolium perenne51.3999.3385.62445forward
CNT30605857Saccharum spontaneumGossypium raimondii32.134.2884.17278forward
CNT30216750Saccharum spontaneumKalanchoe fedtschenkoi30.654.0880.38265forward
CNT3067990Saccharum spontaneumLeersia perrieri45.96104.4681.66398forward
CNT30205386Saccharum spontaneumHelianthus annuus34.5341.8281.61299forward
CNT30350935Saccharum spontaneumEragrostis tef45.9653.4985.43398forward
CNT30620243Saccharum spontaneumCajanus cajan24.8364.7681.86215forward
CNT30408809Saccharum spontaneumPapaver somniferum48.8548.9678.96423forward
CNT30573925Saccharum spontaneumVitis vinifera38.5740.8381.14334forward
CNT3051702Saccharum spontaneumAmborella trichopoda26.9138.0781.12233forward
CNT30330871Saccharum spontaneumDioscorea rotundata31.4137.6282.35272forward
CNT30335475Saccharum spontaneumCynara cardunculus35.123.482.89304forward
CNT3049385Saccharum spontaneumCucumis sativus45.6149.8779.75395forward

Expression of CNT30468540

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLTMESNHLVKGMVRMPCAQHMVRTKHLY*

Sequence

>CNT30468540
GTCATCCTGGGGCTGCTTGGAGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTTGGAGAAGTAGGACTGTAGCTCGGAGAAGTAG
GACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAGGTAGGGCTGTATGCAGGTGATGTCGGGCTGTATGAGGGAGATGTAGGGCTATATGAGGGGGA
AGTAGGACTGTATGATGGGGAGGTAGGGCTGTATGACGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGAT
GGCGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGTGAGGTTGGACTATAAACTGGTGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTAT
AGCTAGGAGATGTAGGGCTGTAACTTGGTGATGTAGGACTGTAGCTAGGAGATGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGG
GCTGTAACTTGGTGATGTAGGACTGTAGCTAGGAGATGTTGGGCTGTAACTCGGAGATGTCGGTGAGTATGATGGACTGGTAGGCGAGTAAGTCGGACTT
GTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGCGATGCAGGGCTGTATGATG
GAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACTGGAGAAGATGGACTGTATCCCCCTGACGATGGAGAGTAACCACCTGGTGAAGGGAATGGTGA
GAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTATTAATGGGGGAAGCCCTGATGTT