« Back to Cannabis sativa search


Detailed information on CNT30642027


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 5e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549166Cannabis sativaIpomoea triloba68.6565.1879.45438forward
CNT30376379Cannabis sativaArabidopsis thaliana63.3254.381.44404forward
CNT30616384Cannabis sativaSesamum indicum51.148.3781.9326forward
CNT30267763Cannabis sativaChenopodium quinoa55.3350.6580.17353forward
CNT3021339Cannabis sativaCitrullus lanatus61.2961.6781.84391forward
CNT30379091Cannabis sativaManihot esculenta47.4951.3681.85303forward
CNT30628702Cannabis sativaVigna unguiculata66.6162.0479.29425forward
CNT30489068Cannabis sativaOlea europaea72.7393.9379.96464forward
CNT30710435Cannabis sativaGlycine max89.6699.1380.07572forward
CNT3042435Cannabis sativaPrunus dulcis69.1263.7385.03441forward
CNT30559890Cannabis sativaActinidia chinensis69.4464.8680.59443forward
CNT30235097Cannabis sativaBrassica oleracea63.9550.9482.6408forward
CNT30508953Cannabis sativaSolanum lycopersicum36.5299.1579.83233forward
CNT30171519Cannabis sativaTrifolium pratense19.9137.3585.04127forward
CNT30263629Cannabis sativaBrassica rapa71.4779.5882.24456forward
CNT30607691Cannabis sativaGossypium raimondii51.5748.682.98329forward
CNT30216752Cannabis sativaKalanchoe fedtschenkoi26.1836.0785.63167forward
CNT30648253Cannabis sativaRosa chinensis40.7538.9883.85260forward
CNT30713436Cannabis sativaMalus domestica golden39.3477.9583.27251forward
CNT30573870Cannabis sativaVitis vinifera68.561.9980.78437forward
CNT30705859Cannabis sativaPrunus avium96.8782.7382.04618forward
CNT3028162Cannabis sativaTheobroma cacao43.149.0285.09275forward
CNT3035176Cannabis sativaCucumis melo48.7556.5582.64311forward
CNT30330871Cannabis sativaDioscorea rotundata83.2373.4480.6531forward
CNT3049385Cannabis sativaCucumis sativus67.0854.0483.41428forward

Expression of CNT30642027

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMDCILLIEDCNLEMLDYNLVRLDYNQEKLDCRLVKLDCRTEM*

>peptide 2 (44 aa)
MWGCTQVRWDYIQVKLGYNQGKLDYIQGKMGYSLEMMGCNQGMK*

Sequence

>CNT30642027
CTGTAATTTGGAGATGTAGGACTATAAGGACTGGCTGGTGGCAACCTCGGACTGCTTGGAGAATAAGCCAATGATGGACTGTATTTTGCTGATTGAGGAT
TGTAACTTGGAGATGTTGGACTATAACTTGGTGAGGTTGGACTATAACCAGGAGAAGTTGGACTGTAGGCTGGTGAAGTTGGACTGTAGGACGGAGATGT
AGGGCTGTAGGACGGTGATGTTGGGCTGTAGGACGGTGATGTAGGGCTGTAAGAAGGTGAGGTCGGACTGTAACTTGGTGAGGTTGGACTGTAACTTGGA
GATGTTGGACTGTAACTGGGTGAAGTTGGACTGTAACTTGGAGAAGTAGGGCTATAGCTTGGTGATGTGGGTGAATAAGATGGACTTGTAGGAGAATAGG
CAGGACTTGTTGGACTATAGCCCGGGGAGCTAGGACTGTAGGTTGGAGATGTGGGGCTGTACCCAGGTGAGGTGGGACTATATCCAGGTGAAGTTGGGCT
ATAACCAGGGGAAGTTGGACTATATCCAGGGGAAGATGGGCTATAGCCTGGAGATGATGGGCTGTAACCAGGGGATGAAGTAGGTGAAAACGCCATTGTT
CCAGCATATGGCGAGAATTGCGCATCAGTAATGGGAGA