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Detailed information on CNT30607743


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 7e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315993Gossypium raimondiiCorylus avellana70.9647.7681479forward
CNT30549166Gossypium raimondiiIpomoea triloba41.6341.8282.21281forward
CNT30376158Gossypium raimondiiArabidopsis thaliana81.1961.380.84548forward
CNT30727661Gossypium raimondiiCorchorus capsularis92.7410087.06626forward
CNT3042435Gossypium raimondiiPrunus dulcis93.3391.0482.22630forward
CNT30559890Gossypium raimondiiActinidia chinensis81.4880.5381.82550forward
CNT30476941Gossypium raimondiiArabidopsis halleri78.5266.1780.57530forward
CNT30154742Gossypium raimondiiPrunus persica10080.4582.07675forward
CNT30573870Gossypium raimondiiVitis vinifera98.0793.981.27662forward
CNT30705859Gossypium raimondiiPrunus avium74.6767.4782.54504forward
CNT3035176Gossypium raimondiiCucumis melo80.7499.0979.82545forward
CNT30176441Gossypium raimondiiVigna angularis88.7499.0178.96599forward
CNT3049385Gossypium raimondiiCucumis sativus70.2259.8581.86474forward

Expression of CNT30607743

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLDCKDWKETTLDYLVSMPETDCTWLTAGCNLER*

>peptide 2 (75 aa)
MWDCNLVRLDCTQEKWGYKREMWGYRKEMWGCTKEMWGCMMEMWGCTMEKWGYMQEKWGYMQEKWGYIRVKWGCS*

Sequence

>CNT30607743
CTGTAATTAGGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTACTTGGTGAGTATGCCAGAGACGGACTGTACTTGGCTGACTGCGGGT
TGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGATGTGGGACTGTAACTTGGTGAGGTTGGACTGTACCCAGGAGAAGTGGGGCTATAAGCGGGAGATGT
GGGGCTATAGGAAGGAGATGTGGGGCTGTACGAAGGAGATGTGGGGCTGTATGATGGAGATGTGGGGCTGTACGATGGAGAAGTGGGGCTATATGCAGGA
GAAGTGGGGCTATATGCAGGAGAAGTGGGGCTATATACGGGTGAAGTGGGGCTGTAGCTAGGTGAAGTGGGACTGTAACTGGGGGATGTGGGACTGTAAC
TTGGAGATGTAGGGCTGTAACTTGGAGAGGTAGGGCTATAGCTTGGTGAGGTTGGAGAATATGAGGGGCTGGTAGGAGAGTAGGCTGGACTTGTCGGACT
GTATCCTGGTGAGCTAGGACTGTAAGTAGGTGATGTGGGGCTGTAACCAGGAGAGGTGGGACTGTACCCAGGAGATGTAGGACTGTAACCAGGAGAGGTA
GGACTGTAACCAGGTGATGACGGACTGTATCCAGGAGATGATGGGCTGTAACCGGGGGATGACGTAGGAGAGAAT