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Detailed information on CNT30366537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Sorghum bicolorSetaria italica52.5273.9992.36458forward
CNT30316118Sorghum bicolorCorylus avellana23.9729.2782.78209forward
CNT30549166Sorghum bicolorIpomoea triloba18.4623.9683.23161forward
CNT30516858Sorghum bicolorJuglans regia27.0655.0181.36236forward
CNT30500604Sorghum bicolorCoffea canephora26.0336.9181.5227forward
CNT30727660Sorghum bicolorCorchorus capsularis23.9738.2180.86209forward
CNT30379142Sorghum bicolorManihot esculenta24.6623.0280215forward
CNT30628784Sorghum bicolorVigna unguiculata29.1333.3881.5254forward
CNT30708216Sorghum bicolorGlycine max22.5935.2485.28197forward
CNT30304911Sorghum bicolorTriticum aestivum17.4325.4288.16152forward
CNT30400271Sorghum bicolorTriticum turgidum26.2646.2683.84229forward
CNT30559586Sorghum bicolorActinidia chinensis20.1821.8186.93176forward
CNT3088022Sorghum bicolorVigna radiata17.7835.8884.52155forward
CNT30508941Sorghum bicolorSolanum lycopersicum19.8443.5882.08173forward
CNT30554779Sorghum bicolorOryza glaberrima70.365.5682.71613forward
CNT30256655Sorghum bicolorAvena sativa17.5534.0887.58153forward
CNT30312353Sorghum bicolorCamelina sativa30.0563.981.68262forward
CNT30263540Sorghum bicolorBrassica rapa26.9536.4380.85235forward
CNT30468674Sorghum bicolorSaccharum spontaneum62.559.4397.61545forward
CNT30141877Sorghum bicolorLolium perenne17.4333.9386.18152forward
CNT3016767Sorghum bicolorZea mays61.1270.593.25533forward
CNT30608057Sorghum bicolorGossypium raimondii28.141.3280.82245forward
CNT3067990Sorghum bicolorLeersia perrieri21.2248.5684.86185forward
CNT30688581Sorghum bicolorTriticum urartu27.4141.1483.68239forward
CNT30350933Sorghum bicolorEragrostis tef39.7944.3285.88347forward
CNT30620243Sorghum bicolorCajanus cajan21.5656.6382.98188forward
CNT30596736Sorghum bicolorOryza meridionalis42.4349.0180.54370forward
CNT30370935Sorghum bicolorOryza glumipatula70.6463.6480.84616forward
CNT30154878Sorghum bicolorPrunus persica30.0551.3782.82262forward
CNT30705859Sorghum bicolorPrunus avium26.3830.7981.3230forward
CNT3028162Sorghum bicolorTheobroma cacao23.9737.2584.21209forward
CNT30103173Sorghum bicolorOryza rufipogon70.6463.4481.49616forward
CNT30584421Sorghum bicolorEchinochloa crusgalli61.8166.8790.72539forward
CNT30497905Sorghum bicolorDigitaria exilis69.6167.2291.93607forward
CNT30176441Sorghum bicolorVigna angularis17.7825.6283.87155forward
CNT30558075Sorghum bicolorPanicum hallii56.7762.7489.9495forward
CNT3049385Sorghum bicolorCucumis sativus27.4130.1880.33239forward

Expression of CNT30366537

Peptides detected in this lncRNA

>peptide 1 (32 aa)
EKSDYMESSGGCLESMHAKGCTWLMKDCSSEK*

>peptide 2 (33 aa)
MDCIPLTMESNHLVKGMVRMPCAQHMVRTKHLY*

Sequence

>CNT30366537
GGAGAAGTCTGACTATATGGAGTCATCCGGGGGCTGCTTGGAGAGTATGCATGCGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGAGAAGTAG
GACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAAGTAGGGCTGTATGCAGGTGATGTTGGGCTGTACGAGGGGGA
GGTAGGGCTGTATGAGGGGGAGGTAGGGCTGTATGAGGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGAT
GGTGATGTGGGGCTATATGCGGGAGATGTAGGGCTGTATGCTGGAGATGTAGGGCTATAAACTGGTGAGGTGGGGCTGTAACTTGGTGATGTAGGACTAT
AACTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTAGGAGATGTTGGGCTGTAACTCGGAGATGTGGGTGAGTATGATGGACTGGTAGG
CGAGTAAGTCGGACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGCGAT
GCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACAGGAGAAGATGGACTGTATCCCCCTGACGATGGAGAGTAACCACCTG
GTGAAGGGAATGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTATTAATGGGGGAAGCCCTGATGTTTGGACTCAGCAGATAACT
TGGGGACATCATTCCTTCATGGTAAGGTGTCCCAGAGATGGGTGATCGTGCTGGTGTCATGCCGAAGTCCAG