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Detailed information on CNT30354603


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549166Lactuca sativaIpomoea triloba47.8648.2181.48324forward
CNT30516897Lactuca sativaJuglans regia34.4226.3681.55233forward
CNT30616460Lactuca sativaSesamum indicum40.9219.383.03277forward
CNT3021339Lactuca sativaCitrullus lanatus49.9353.3181.36338forward
CNT30403468Lactuca sativaBeta vulgaris44.6139.0279.8302forward
CNT30304911Lactuca sativaTriticum aestivum45.4951.5181.17308forward
CNT30554634Lactuca sativaOryza glaberrima49.4840.5180335forward
CNT30145737Lactuca sativaMedicago truncatula40.0343.9980.81271forward
CNT30443444Lactuca sativaAegilops tauschii45.7933.380.65310forward
CNT30256655Lactuca sativaAvena sativa29.143.8884.77197forward
CNT30216750Lactuca sativaKalanchoe fedtschenkoi44.6161.6381.46302forward
CNT3067990Lactuca sativaLeersia perrieri43.7277.6980.41296forward
CNT30688581Lactuca sativaTriticum urartu28.2132.8783.25191forward
CNT30642028Lactuca sativaCannabis sativa47.4262.781.93321forward
CNT3051605Lactuca sativaAmborella trichopoda40.6241.4880.73275forward
CNT30121127Lactuca sativaCitrus clementina75.4862.6278.28511forward
CNT30149986Lactuca sativaBrachypodium distachyon49.9337.6882.25338forward
CNT30103004Lactuca sativaOryza rufipogon49.4833.680.3335forward
CNT30497905Lactuca sativaDigitaria exilis48.1536.182.52326forward

Expression of CNT30354603

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVMLGCRKERSGCKRVRLGCRRVRLGCRMVMSGCRKERSGCKPERSGCKLAM*

>peptide 2 (32 aa)
MMGCTRGTTGYSPVMKLAKNPSHQHKAKTVHR*

Sequence

>CNT30354603
GGGGGATGTAGGGCTGTATGGACTACTAGGAGAATAAGCCAACGAGGGGCTGTACTTAGCGGATGAAGGGTTGTAACTTGGTGAGGTGGGACTGTAACTT
GGAGAAGTAGGACTGTAGCTTGGGGAAGTAGGACTGTACCCAGGTGAAGTTGGGCTGTAAGCAGGGGAGGTTGGGCTGTAGGAAGGGGAGGTCGGGCTGT
AGGATGGTGATGTTGGGCTGTAGGAAGGAGAGGTCGGGCTGTAAGAGGGTGAGGTTGGGCTGTAGGAGGGTGAGGTTGGGCTGTAGGATGGTGATGTCGG
GCTGTAGGAAGGAGAGGTCGGGCTGTAAGCCGGAGAGGTCGGGCTGTAAGCTGGCGATGTAGGGCTGTAGCTAGGTGAAGTGGGTGAGTAGGTAGGACTT
GTTGGGCTATAACCGGGTGAACTTGGGCTGTAAGTTGGAGAGGTGGGACTGTAACCCGGAGATGTAGGGCTATAGCCCGGTGAGGTTGGGCTATAACCAG
GCGAGGTGGGGCTGTATCCCGGAGATGATGGGCTGTACCCGGGGGACGACGGGCTATAGCCCGGTGATGAAGTTGGCGAAAAACCCATCCCACCAACATA
AGGCGAAAACTGTGCATCGTTAATCGGAGACAGCCGTAGATTTGGGCTCAACAGATAATTCGTGGGAGACATTGCAC