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Detailed information on CNT30498009


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 3e-41

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Digitaria exilisNymphaea colorata17.3622.4683.53170forward
CNT30316008Digitaria exilisCorylus avellana25.3337.9282.66248forward
CNT30549101Digitaria exilisIpomoea triloba24.4140.5182.01239forward
CNT30378927Digitaria exilisManihot esculenta32.9952.1881.11323forward
CNT30628927Digitaria exilisVigna unguiculata32.9957.6881.42323forward
CNT30708216Digitaria exilisGlycine max30.5453.4981.27299forward
CNT30193210Digitaria exilisSecale cereale18.3984.1185180forward
CNT30234460Digitaria exilisBrassica oleracea35.1448.9381.4344forward
CNT30554721Digitaria exilisOryza glaberrima97.85102.4682.57958forward
CNT30145737Digitaria exilisMedicago truncatula35.1455.8481.4344forward
CNT3079663Digitaria exilisBrassica juncea35.1464.6681.69344forward
CNT30263848Digitaria exilisBrassica rapa32.9976.3680.8323forward
CNT30140910Digitaria exilisLolium perenne36.2699.4483.94355forward
CNT30608057Digitaria exilisGossypium raimondii40.2566.4480.46394forward
CNT3067979Digitaria exilisLeersia perrieri36.3698.8985.11356forward
CNT30688162Digitaria exilisTriticum urartu48.2170.2483.47472forward
CNT30154934Digitaria exilisPrunus persica35.7575.7679.43350forward
CNT30408809Digitaria exilisPapaver somniferum44.9450.9379.32440forward
CNT30642025Digitaria exilisCannabis sativa40.4577.1979.55396forward
CNT3051605Digitaria exilisAmborella trichopoda42.1962.2978.69413forward
CNT30109704Digitaria exilisOryza longistaminata24.2142.6388.19237forward
CNT3035176Digitaria exilisCucumis melo39.7370.7378.66389forward
CNT30103004Digitaria exilisOryza rufipogon100.3198.582.69982forward
CNT30577473Digitaria exilisOryza barthii29.9353.7686.69293forward
CNT30176441Digitaria exilisVigna angularis35.1456.8680.23344forward
CNT30558075Digitaria exilisPanicum hallii80.5910087.07789forward
CNT30551544Digitaria exilisOryza brachyantha45.3563.8885.59444forward
CNT3049544Digitaria exilisCucumis sativus32.7940.0780.37321forward

Expression of CNT30498009

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLMMESSHLAMGKVRMPCAQHMVRTKHLC*

>peptide 2 (29 aa)
MLGCNLEMWASMMDWLASKLDLLGSNLGL*

>peptide 3 (35 aa)
CNLEKSDCMVSSSGCLESKHAKGCTWLKKDCSLEK*

Sequence

>CNT30498009
CTGTAATTTGGAGAAGTCTGACTGTATGGTGTCATCCTCGGGCTGCTTGGAGAGTAAGCATGCGAAGGGCTGTACTTGGCTGAAGAAGGATTGTAGCTTG
GAGAAGTAGGACTGTAGCTTGGCGATGTCGGGCTGTAGCTTGGCGATGTCGGGCTGTATCCAGGTGAGGTAGGACTGTATGCAGGGGATGTCGGGCTGTA
TGAGGGGGATGTCGGGCTGTATGAAGGAGACGTAGGGCTGTATGAAGGAGACGTAGGGCTGTATGATGGTGATGTTGGGCTATAAGATGGTGACGTTGGG
CTGTAGGCAGGAGAGGTAGGGCTATATGCAGGCGAGGTTGGACTATAAACTGGCGAGGTGGGGCTGTAGCTTGGGGATGTAGGACTGTAGCTCGGAGATG
TTGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTGGGAGATGTTGGGCTGTAACTTGGAGATGTGGGCGAGTATGATGGACTGGTTGGCGAGTAAGTTGG
ACTTGTTGGGGAGTAATTTGGGCTTGTAGGACTGTAAGTGGGAGAGCCAGGTGTATACGATGGTGAGGTGGGACTATAGCTTGGTGAAGCAGGGCTGTAT
GATGGAGAAAGCGGGCTATATCCTTTTTCTGGGGTGAAAACTGGAGAAGATGGACTGTATCCCCCTGATGATGGAGAGTAGCCACCTGGCGATGGGAAAG
GTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTGTTAATGGGGGAAGCCCTGATGTTCGGACTCAGCAGATAACTTGGCGACATCAT
TCCTTCATGATAGGGTGTCCCAGAGATGGGTGAACGTGCTGGTGTCATGCCAAAGTCCAAACCTTCCACATAGCTAGGGAGTTGAAGTTCAATTGCCTGC
TGCAACATCTGGTCATTCAGATATAGTGCACATCCTCCAGTACCAATAGGAGCAAGTTGGCCAAGCATAATGTTCTCAG