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Detailed information on CNT30263540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316118Brassica rapaCorylus avellana46.3641.8883.61299forward
CNT30516792Brassica rapaJuglans regia94.5768.5480.16610forward
CNT30376158Brassica rapaArabidopsis thaliana102.6474.0586.1662forward
CNT30616460Brassica rapaSesamum indicum64.528.9982.45416forward
CNT30269232Brassica rapaChenopodium quinoa63.163.9981.08407forward
CNT3021339Brassica rapaCitrullus lanatus62.6463.7284.65404forward
CNT30727661Brassica rapaCorchorus capsularis65.8967.8981.18425forward
CNT30378908Brassica rapaManihot esculenta75.551.5983.16487forward
CNT30524942Brassica rapaPhaseolus vulgaris67.9165.2878.31438forward
CNT30628702Brassica rapaVigna unguiculata63.726080.05411forward
CNT30195835Brassica rapaPisum sativum27.2969.2981.82176forward
CNT3042435Brassica rapaPrunus dulcis63.7259.3981.51411forward
CNT30307041Brassica rapaTriticum aestivum40.4748.6983.14261forward
CNT30400271Brassica rapaTriticum turgidum41.453.9483.15267forward
CNT30559586Brassica rapaActinidia chinensis68.0654.479.95439forward
CNT30592011Brassica rapaMusa acuminata31.6350.3781.86204forward
CNT3087851Brassica rapaVigna radiata103.2672.8777.63666forward
CNT30234460Brassica rapaBrassica oleracea89.381.9398.09576forward
CNT30508904Brassica rapaSolanum lycopersicum64.0366.8379.42413forward
CNT30668234Brassica rapaTriticum dicoccoides30.5433.582.74197forward
CNT30312132Brassica rapaCamelina sativa10099.5486.36645forward
CNT3076593Brassica rapaBrassica juncea79.5393.9694.35513forward
CNT30468644Brassica rapaSaccharum spontaneum37.5225.7281.4242forward
CNT30605857Brassica rapaGossypium raimondii84.567.281.1545forward
CNT30688581Brassica rapaTriticum urartu46.0551.1282.15297forward
CNT30476941Brassica rapaArabidopsis halleri94.7376.2885.43611forward
CNT30366537Brassica rapaSorghum bicolor42.1731.1980.88272forward
CNT30620207Brassica rapaCajanus cajan36.5910.9881.78236forward
CNT30154934Brassica rapaPrunus persica58.1481.1782.67375forward
CNT30408809Brassica rapaPapaver somniferum55.1941.280.9356forward
CNT30573855Brassica rapaVitis vinifera59.8464.1280.57386forward
CNT30705868Brassica rapaPrunus avium99.8460.6482.45644forward
CNT30642025Brassica rapaCannabis sativa47.7560.0483.77308forward
CNT3028162Brassica rapaTheobroma cacao62.1771.4880.3401forward
CNT3051702Brassica rapaAmborella trichopoda53.3356.2178.78344forward
CNT30120999Brassica rapaCitrus clementina93.3344.8680.4602forward
CNT30103004Brassica rapaOryza rufipogon38.4524.8783.06248forward
CNT30497905Brassica rapaDigitaria exilis42.1730.1280.88272forward
CNT30176441Brassica rapaVigna angularis57.0560.8379.89368forward
CNT3049544Brassica rapaCucumis sativus62.6450.4483.42404forward

Expression of CNT30263540

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MGCSLEMKKEKTPFHQHMEKTEHLTLETTAYLDSGGSLGTSCFHDKEFLTLVSEQESFQTPVHPYS*

>peptide 2 (43 aa)
MQVTLGCMQEKLDCKQVKLDCNSGMLGCSLETLDCSLETLGYS*

Sequence

>CNT30263540
GCTGTATGCAGGTGAAGTAGGACTGTAAGAAGGAGATGTTGGACTGTAGGAGGGTGAAGTAGGGCTGTAAGAAGGCGATGTCGGACTGTAAGATGGTGAA
GTAGGGCTGTATGCAGGTGACGTTGGGCTGTATGCAGGAGAAGTTGGACTGTAAGCAGGTGAAGTTGGACTGTAACTCGGGGATGTTGGGCTGTAGCTTG
GAGACGTTGGACTGTAGCTTGGAGACGTTGGGCTATAGCTAGGAGACGTTGGGCTGTAGCTAGGGGAGGTGGGAGAATATGAAGGACTTGTTGGAGAATA
AGCAGGGCTAGTTGGGCTATAGCCAGGAGAACTAGGACTGTACGTGGGAGAAGTGGGACTATAGCCAGGAGAAGTCGGACTGTATCCAGGAGAAGTAGGA
CTGTAACCAGGAGAAGATGGGCTGTAGCCTGGAGATGAAGAAGGAGAAAACGCCATTCCACCAACATATGGAGAAAACTGAGCATCTGACATTGGAGACA
ACCGCATATTTGGACTCAGGAGGTAGTTTGGGGACATCATGCTTTCATGATAAGGAGTTCCTGACATTGGTGAGCGAGCAGGAGTCATTCCAAACTCCAG
TCCATCCATATAGCTAGGGAGCTGAAGTTCAATTGCATTCTTCAG