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Detailed information on CNT30378908


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 1e-50

BLAST vs NONCODE:
NONSTUT001430, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549224Manihot esculentaIpomoea triloba37.3957.5980.17353forward
CNT30376158Manihot esculentaArabidopsis thaliana58.5861.8678.66553forward
CNT30616460Manihot esculentaSesamum indicum96.1963.2877.86908forward
CNT30708216Manihot esculentaGlycine max27.5446.5182.69260forward
CNT3091732Manihot esculentaSolanum tuberosum59.3249.1780.18560forward
CNT30307041Manihot esculentaTriticum aestivum27.2247.9580.54257forward
CNT30559890Manihot esculentaActinidia chinensis34.8548.1782.37329forward
CNT3088022Manihot esculentaVigna radiata26.2757.4182.66248forward
CNT30234460Manihot esculentaBrassica oleracea35.0647.0885.5331forward
CNT30554721Manihot esculentaOryza glaberrima36.1236.4780.06341forward
CNT30263540Manihot esculentaBrassica rapa51.5975.583.16487forward
CNT30468674Manihot esculentaSaccharum spontaneum30.0830.9781.69284forward
CNT3016767Manihot esculentaZea mays36.7645.980.69347forward
CNT30605857Manihot esculentaGossypium raimondii74.2686.4481.6701forward
CNT30216752Manihot esculentaKalanchoe fedtschenkoi18.5437.882.86175forward
CNT3067979Manihot esculentaLeersia perrieri36.3395.2880.47343forward
CNT30713436Manihot esculentaMalus domestica golden20.4459.9482.9193forward
CNT30625385Manihot esculentaDaucus carota44.3941.6179419forward
CNT30370935Manihot esculentaOryza glumipatula43.5442.4679.08411forward
CNT30154712Manihot esculentaPrunus persica61.5574.5879.35581forward
CNT30410142Manihot esculentaPapaver somniferum50.6472.6479.71478forward
CNT30705868Manihot esculentaPrunus avium80.371.3782.72758forward
CNT30121121Manihot esculentaCitrus clementina93.0165.4282.46878forward
CNT30103004Manihot esculentaOryza rufipogon39.0937.0179.67369forward
CNT30497905Manihot esculentaDigitaria exilis36.4438.181.1344forward
CNT30558075Manihot esculentaPanicum hallii26.2731.4383.47248forward
CNT30114394Manihot esculentaFicus carica18.3329.0884.39173forward

Expression of CNT30378908

Peptides detected in this lncRNA

>peptide 1 (80 aa)
LGLKGNMMEKSVNMMVRSGYSLAMLGYSLVRLDCNQGMSGYKQVKLDCMMEMWGCKKARLGYRKVTLGYRKEKLGCMMVR*

Sequence

>CNT30378908
GTTGGGCTTGAAGGGGAATATGATGGAGAAGTCGGTGAATATGATGGTGAGGTCGGGCTATAGCTTGGCGATGTTGGGCTATAGCTTGGTGAGGTTGGAC
TGTAACCAGGGGATGTCGGGCTATAAGCAGGTGAAGTTGGACTGTATGATGGAGATGTGGGGCTGTAAGAAGGCGAGGTTGGGCTATAGGAAGGTGACGT
TGGGCTATAGGAAGGAGAAGTTGGGCTGTATGATGGTGAGGTAGGACTGTATGCAGGCGAAGTGGGACTATATGCAGGTGAAGTGGGACTATATACTGGA
GATGTAGGGCTATAGCTTGGTGAAGTTGGGCTGTAACTGGGAGATGTGGGGCTATAGCTTGGAGAGGTTGGACTATAACTTGGAGATGTTGGGCTATAGC
TGGGAGAAGTTGGGCTGTAACTAGGGGAAGTTGGGGAATACGATGGACTTGTAGGAGAATAGGCAGGACTGGTAGGGCTATAGCCAGGAGAACTAGGGCT
ATAAGTTGGCGAAGTTGGGCTGTATCCAGGAGACGTAGGACTGTAACCAGGGGATGATGGACTGTAACCAGGGGATGATGGGCTATAGCCTGGAGATGAA
GTAGGAGAGAAAGCCATTCCACCTACATATGGTGAGAACTGAGCATCTGTAATGGGTGAAAGGCGAAGACTAGGGCTCAGTAAATAACTTGGAGACATCA
TGCCCTCATGGTAAGGTGTCCCTGAGACTGGGGAACGTGCAGGAGTCATGCCGAAATCCAGGCCATCCATATAACTGGGGAGCTGAAGTTCAATGGCATT
CTTCAACATTTCATCATTGAGATACAAAGAACAACCTCCTGTGCCAATTGGTGCAAGCTGACCAAGCATAATATTTTCAGTGACACCTCTCAAATGATCA
GTTTCAGCAAACACTGCAGCATCAAGAAGAATGTCTACGGTCTC