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Detailed information on CNT30109704

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675703	Oryza longistaminata	Setaria viridis	32.37	64.06	82.22	180	forward
CNT30523536	Oryza longistaminata	Setaria italica	41.91	41.24	82.4	233	forward
CNT30536042	Oryza longistaminata	Eucalyptus grandis	28.96	29.27	85.09	161	forward
CNT30549166	Oryza longistaminata	Ipomoea triloba	42.45	35.12	80.51	236	forward
CNT30376158	Oryza longistaminata	Arabidopsis thaliana	38.31	23.83	83.57	213	forward
CNT30267761	Oryza longistaminata	Chenopodium quinoa	41.91	28.55	83.26	233	forward
CNT30506121	Oryza longistaminata	Nicotiana attenuata	39.21	52.66	82.11	218	forward
CNT30710467	Oryza longistaminata	Glycine max	33.27	25.59	82.7	185	forward
CNT3091337	Oryza longistaminata	Solanum tuberosum	39.21	26.72	83.03	218	forward
CNT30193210	Oryza longistaminata	Secale cereale	25.18	65.42	88.57	140	forward
CNT30304911	Oryza longistaminata	Triticum aestivum	42.45	39.46	86.02	236	forward
CNT30400271	Oryza longistaminata	Triticum turgidum	42.45	47.68	86.02	236	forward
CNT30559890	Oryza longistaminata	Actinidia chinensis	39.39	32.06	82.19	219	forward
CNT30508722	Oryza longistaminata	Solanum lycopersicum	39.21	42.5	83.49	218	forward
CNT30554566	Oryza longistaminata	Oryza glaberrima	40.47	42.21	99.11	225	forward
CNT30145737	Oryza longistaminata	Medicago truncatula	39.93	36.04	81.98	222	forward
CNT30442780	Oryza longistaminata	Aegilops tauschii	42.81	30.01	84.45	238	forward
CNT30256655	Oryza longistaminata	Avena sativa	39.75	49.22	87.33	221	forward
CNT30668234	Oryza longistaminata	Triticum dicoccoides	65.11	61.56	82.32	362	forward
CNT30312227	Oryza longistaminata	Camelina sativa	40.29	53.08	82.14	224	forward
CNT3079663	Oryza longistaminata	Brassica juncea	35.43	37.03	82.23	197	forward
CNT30263848	Oryza longistaminata	Brassica rapa	38.67	50.83	84.19	215	forward
CNT30468644	Oryza longistaminata	Saccharum spontaneum	41.91	24.76	84.98	233	forward
CNT30140910	Oryza longistaminata	Lolium perenne	42.45	66.11	87.71	236	forward
CNT3017802	Oryza longistaminata	Zea mays	35.43	50.64	84.77	197	forward
CNT30216750	Oryza longistaminata	Kalanchoe fedtschenkoi	29.14	33.06	82.72	162	forward
CNT3067990	Oryza longistaminata	Leersia perrieri	38.67	56.43	89.77	215	forward
CNT30205386	Oryza longistaminata	Helianthus annuus	42.45	33.01	82.2	236	forward
CNT30687113	Oryza longistaminata	Triticum urartu	42.45	44.36	86.44	236	forward
CNT30350937	Oryza longistaminata	Eragrostis tef	42.45	42.68	87.71	236	forward
CNT30476914	Oryza longistaminata	Arabidopsis halleri	39.21	38.93	83.03	218	forward
CNT30366570	Oryza longistaminata	Sorghum bicolor	44.6	40.52	84.27	248	forward
CNT30620243	Oryza longistaminata	Cajanus cajan	18.17	30.42	86.14	101	forward
CNT30596739	Oryza longistaminata	Oryza meridionalis	72.66	62.15	88.12	404	forward
CNT30355218	Oryza longistaminata	Lactuca sativa	46.22	37.85	81.32	257	forward
CNT30370935	Oryza longistaminata	Oryza glumipatula	40.47	23.24	99.56	225	forward
CNT30410142	Oryza longistaminata	Papaver somniferum	30.58	25.84	82.94	170	forward
CNT3027877	Oryza longistaminata	Theobroma cacao	33.81	47.59	83.51	188	forward
CNT3035160	Oryza longistaminata	Cucumis melo	40.47	44.64	80.44	225	forward
CNT30150463	Oryza longistaminata	Brachypodium distachyon	42.45	26.85	87.29	236	forward
CNT30103004	Oryza longistaminata	Oryza rufipogon	40.47	22.57	100	225	forward
CNT30577473	Oryza longistaminata	Oryza barthii	72.66	74.13	87.62	404	forward
CNT30584450	Oryza longistaminata	Echinochloa crusgalli	42.45	31.51	84.32	236	forward
CNT30498009	Oryza longistaminata	Digitaria exilis	42.63	24.21	88.19	237	forward
CNT30558075	Oryza longistaminata	Panicum hallii	42.63	30.04	83.97	237	forward
CNT30551544	Oryza longistaminata	Oryza brachyantha	41.91	33.53	88.84	233	forward
CNT30335475	Oryza longistaminata	Cynara cardunculus	42.45	18.17	82.2	236	forward

Expression of CNT30109704

Peptides detected in this lncRNA

>peptide 1 (33 aa)
CTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 2 (39 aa)
MQEMSDCMRGKWGCKTETLDCMMEMLGYMMVMWGCKMVM*

>peptide 3 (49 aa)
MMEKLGCILALDCKPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

Sequence

>CNT30109704
CTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAGTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATG
TAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGG
TGATGTGGGGCTGTAAGATGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGTGAGTATGATGGACTGGTAGGCGAGTATGACGGACTGGTAGGTGAGTAT
GATGGACTTGTAGGGGAGTAAGTAGGAGAGCCAGGACTATATGATGGAGAAGTTGGGCTGTATCCTGGCCCTGGACTGTAAACCGGAGAAGATGGACTGT
AACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGAAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGC
CCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCATGATATGGTG