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Detailed information on CNT30193210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Secale cerealeSetaria viridis80.3761.2182.56172forward
CNT30523577Secale cerealeSetaria italica79.9127.6385.38171forward
CNT30535924Secale cerealeEucalyptus grandis40.1929.3588.3786forward
CNT30304911Secale cerealeTriticum aestivum10035.7996.73214forward
CNT30400271Secale cerealeTriticum turgidum95.3341.2196.57204forward
CNT30554634Secale cerealeOryza glaberrima82.2421.2888.07176forward
CNT30442780Secale cerealeAegilops tauschii97.6626.3695.69209forward
CNT30256655Secale cerealeAvena sativa10047.6690.19214forward
CNT30668234Secale cerealeTriticum dicoccoides70.5625.6898.68151forward
CNT30468540Secale cerealeSaccharum spontaneum84.1120.7985.56180forward
CNT30141877Secale cerealeLolium perenne79.9138.1790.64171forward
CNT3016764Secale cerealeZea mays99.0737.7286.79212forward
CNT3067990Secale cerealeLeersia perrieri45.7925.7287.7698forward
CNT30688491Secale cerealeTriticum urartu1005096.73214forward
CNT30341750Secale cerealeEragrostis tef10039.4888.79214forward
CNT30366570Secale cerealeSorghum bicolor79.4427.7885.29170forward
CNT30596736Secale cerealeOryza meridionalis82.2423.3188.07176forward
CNT30370935Secale cerealeOryza glumipatula82.2418.1888.07176forward
CNT30109704Secale cerealeOryza longistaminata65.4225.1888.57140forward
CNT30150463Secale cerealeBrachypodium distachyon10024.3590.65214forward
CNT30103004Secale cerealeOryza rufipogon82.2417.6588.07176forward
CNT30577473Secale cerealeOryza barthii82.2432.2988.07176forward
CNT30584421Secale cerealeEchinochloa crusgalli84.1122.3387.78180forward
CNT30498009Secale cerealeDigitaria exilis84.1118.3985180forward
CNT30558075Secale cerealePanicum hallii83.1822.5688.2178forward
CNT30551544Secale cerealeOryza brachyantha79.9124.687.72171forward

Expression of CNT30193210

Peptides detected in this lncRNA

>peptide 1 (64 aa)
CSSEKSGCTGSSSLGCLENKHVKDCTWPKKDCSSVKWGCSSVKLGCSSVTSGCNQAMLGCMRAR*

Sequence

>CNT30193210
CTGTAGTTCGGAGAAGTCTGGCTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTGGGGCTGTAGTTCGGTGAAGTTGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTTGGGCTGTATGAGGGCGAGGTAGGGCT
GTATGAGGGGGATG