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Detailed information on CNT30115234


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Eutrema salsugineumOryza sativa19.6120.059080forward
CNT30533222Eutrema salsugineumEucalyptus grandis20.125.2392.6882forward
CNT30514313Eutrema salsugineumJuglans regia20.3422.1992.7783forward
CNT30701352Eutrema salsugineumQuercus lobata20.5921.2192.8684forward
CNT3070099Eutrema salsugineumQuercus suber20.5915.0892.8684forward
CNT30628518Eutrema salsugineumVigna unguiculata20.598.3591.6784forward
CNT30638745Eutrema salsugineumCapsicum annuum20.3416.3193.9883forward
CNT3094527Eutrema salsugineumSolanum tuberosum20.3415.991.5783forward
CNT30564366Eutrema salsugineumActinidia chinensis20.3414.3191.5783forward
CNT30538793Eutrema salsugineumBrassica napus22.5523.8395.6592forward
CNT30233654Eutrema salsugineumBrassica oleracea22.7919.3391.493forward
CNT3078393Eutrema salsugineumBrassica juncea26.2324.4992.52107forward
CNT30260384Eutrema salsugineumBrassica rapa22.558.2695.6592forward
CNT30611796Eutrema salsugineumArabis alpina2522.8792.16102forward
CNT30610456Eutrema salsugineumGossypium raimondii20.839.1492.9485forward
CNT30219096Eutrema salsugineumKalanchoe fedtschenkoi19.6122.7992.580forward
CNT30213082Eutrema salsugineumHelianthus annuus20.3418.4990.3683forward
CNT30126894Eutrema salsugineumCorymbia citriodora18.8721.3393.5177forward
CNT30625768Eutrema salsugineumDaucus carota20.5914.6392.8684forward
CNT30619768Eutrema salsugineumCajanus cajan19.1231.296.1578forward
CNT30704989Eutrema salsugineumPrunus avium20.3410.9193.9883forward
CNT3026341Eutrema salsugineumPopulus trichocarpa20.594.2891.6784forward
CNT30120571Eutrema salsugineumCitrus clementina20.346.9692.7783forward

Expression of CNT30115234

Peptides detected in this lncRNA

>peptide 1 (34 aa)
KNVRPIYKIRALSNLSRRKGKTLAIYVVERSANR*

>peptide 2 (49 aa)
MFVFLLLKLEQSFVEHVSFYNTGQRFEYVLFIWWFLIQVMILTSKRLDE*

Sequence

>CNT30115234
AAAAATGTTAGGCCCATTTACAAAATCAGGGCTTTATCCAATTTAAGTAGGCGGAAGGGGAAAACCCTAGCTATATACGTAGTGGAGAGGTCGGCGAACA
GATAGCGTGAATCTGATTTCGGCGATATCACGATGAGAGCCAAGTGGAAGAAGAAGCGCATGAGGAGACTGAAGAGGAAGCGAAGAAAGATGAGACAGAG
ATCCAAGTAGCCTGTCTTGCCTTTATCCCAAATCTCTGCGATTTTTCTTTGAACCTCTATGTTTGTGTTTTTACTTCTTAAGTTGGAACAATCGTTTGTA
GAACATGTTTCTTTTTATAATACAGGGCAGAGGTTTGAATATGTTTTGTTTATTTGGTGGTTTTTGATTCAAGTAATGATTTTAACTTCTAAGCGGCTTG
ATGAATAA