Detailed information on CNT3081183


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701352Brassica junceaQuercus lobata15.420.4596.381forward
CNT3071712Brassica junceaQuercus suber15.420.496.381forward
CNT30191267Brassica junceaSecale cereale15.2123.5393.7580forward
CNT3060687Brassica junceaArabidopsis lyrata24.3332.8292.97128forward
CNT30137004Brassica junceaLolium perenne16.1636.3290.5985forward
CNT30619768Brassica junceaCajanus cajan15.5932.893.982forward
CNT30725207Brassica junceaLupinus angustifolius15.0221.9493.6779forward
CNT30115058Brassica junceaEutrema salsugineum25.6730.4794.07135forward

Expression of CNT3081183

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GYIFTVTLHFLTVSENSPIRVLRKKLSPP*

Sequence

>CNT3081183
AAGGGTATATATTCACAGTCACGCTTCATTTCCTTACCGTCTCCGAGAATTCGCCGATTAGGGTTTTGAGGAAAAAACTTTCTCCGCCATGAGAGCCAAG
TGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGAGTGAAGACTTTGCTTTCCCATCTGCTTCCTTTG
TTTCCCTTATATTCAGAGATCTTTTAAAAACTCCTTTTGTTTGGTCTCGTTTCAGTTTTTAAGTGTTCGTAGCTTTGTTTTTTTTGTCGGATTGTAGGGA
TCCTCAATTAATGGCAATGCTATATCTTTTTTTTTTTATCCACCATTGGTTCTTTCACAAGCCAATCTTAGTTCTGATTTAGGTTTAATCAAGTATCATT
CATCGTTTGGCTTATAGATCCTGTGGAATAACTCAGATTTAGGTTATGTAATTTTCGAATATACAAATCTTGTTTGCTCAGAACTGTCCAACACGTAATG
CTTTTGATTATGATGGTAGTTGTAGT