Detailed information on CNT30248711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Avena sativaEucalyptus grandis14.1624.6293.7580forward
CNT30701352Avena sativaQuercus lobata14.3420.4593.8381forward
CNT30376000Avena sativaArabidopsis thaliana14.3421.6692.5981forward
CNT3071712Avena sativaQuercus suber14.3420.493.8381forward
CNT30506884Avena sativaNicotiana attenuata13.8131.3393.5978forward
CNT30443372Avena sativaAegilops tauschii26.3744.4885.91149forward
CNT3074476Avena sativaBrassica juncea14.3420.7291.3681forward
CNT30467175Avena sativaSaccharum spontaneum10.6225.6496.6760forward
CNT3067939Avena sativaLeersia perrieri12.0423.6197.0668reverse complement
CNT30126894Avena sativaCorymbia citriodora14.1622.1691.2580forward
CNT30704991Avena sativaPrunus avium14.3426.2192.5981forward

Expression of CNT30248711

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MAPAFICQIAYSRNLHYSRPVFVAFSSIRSFAIWTNQLSYLMNSVVGAFICCL*

>peptide 2 (76 aa)
SKLPSRVSLLVVPQSVSSLPLSPLPTTTPPPPLPQEEKEQTRERRSPEEATDHEGQVEEEAHEEAQEEAPKDEAAI*

Sequence

>CNT30248711
CTCGAAGCTACCTTCTAGGGTTTCGCTTCTTGTAGTCCCCCAAAGCGTCAGCTCTCTCCCACTTTCCCCACTCCCCACCACAACACCGCCGCCGCCGCTG
CCGCAGGAGGAGAAGGAGCAGACGCGAGAAAGGAGATCTCCCGAGGAGGCCACCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTCAAG
AGGAAGCGCCGAAAGATGAGGCAGCGATCTAAGTAGGCTGATGGAGGTGGTGGCGCCGTGTTGTAGTTAGCAGCTATCCACGTCTTTGGCTGGATATTTT
GCCTTCTCTGGCATGGCGCCAGCGTTCATCTGTCAAATAGCTTATTCCAGAAACCTGCACTATAGTAGGCCTGTTTTTGTTGCTTTTAGTTCTATCAGGA
GTTTTGCCATCTGGACCAATCAGCTGTCGTATCTTATGAACTCTGTTGTTGGAGCTTTTATTTGCTGCTTATAGCCAGCCATCAAGTATTTCCTATGTTG
GTTTGTGTATTCTGCTGCTTGCATGTTTGCAATTTGGGTTGCTCTATCTGCTGAAGTGGTGATCA