Detailed information on CNT30541757


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701352Brassica napusQuercus lobata13.5420.9695.1883forward
CNT3071712Brassica napusQuercus suber13.5420.9195.1883forward
CNT30506884Brassica napusNicotiana attenuata12.8931.7394.9479forward
CNT30191267Brassica napusSecale cereale13.2123.8292.5981forward
CNT30234423Brassica napusBrassica oleracea79.4510099.18487forward
CNT3074476Brassica napusBrassica juncea30.3447.5796.77186forward
CNT3024248Brassica napusPopulus trichocarpa13.2125.3992.5981forward

Expression of CNT30541757

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFSWLPSCRICMDPSLMLNLYLSNHIFTSLITILITLNC*

Sequence

>CNT30541757
CAGTTGTCTTAGTAGATTCTGTAAACAATGATTCTGCTTAAAAGCAAATAAATTCTAGTTGGCAAAAGAAAAATTTCTAGCTTAGAAATTAATAAATTAT
CATTCTTCTAATTTCTTTAGAGCTGGGGAGTATATAAGCGTTAAAGGCCCAAACGCTTACAACCGTTAAGGCCGAAACATCTAGCTAGGGTTTTCAAGGG
TATGGCATATATTAGCAGTGACGCTTCATTTCTTGTCTTGTTACCGTCACCGTGAGTCCGCGTTTTGAGAAAAAAGTGTCTCCACCATGAGAGCCAAGTG
GAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGACTTCGCATTTCAATCTGCTTCCTTGTTTCTGTTAC
TTCTCCAAGTACTTTTGTTTGATCTTGTTTCAGTTTTATGTTTTCTTGGCTTCCTTCTTGTAGGATTTGTATGGATCCTTCATTAATGTTAAACCTTTAT
CTATCTAATCACATTTTCACCAGCTTAATTACAATCCTTATAACTTTAAATTGCTAACAAAACAAATGGGTTTGTATTTTACTATCTTGACAAAAAAAAG
ATATCATTGTGAG