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Detailed information on CNT3024261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514313Populus trichocarpaJuglans regia10.3822.7397.6585forward
CNT30701352Populus trichocarpaQuercus lobata10.1320.9695.1883forward
CNT30376000Populus trichocarpaArabidopsis thaliana10.1322.1992.7783forward
CNT3071712Populus trichocarpaQuercus suber10.1320.9195.1883forward
CNT30191267Populus trichocarpaSecale cereale9.8923.8292.5981forward
CNT30309894Populus trichocarpaCamelina sativa9.5237.3292.3178forward
CNT3074476Populus trichocarpaBrassica juncea10.0120.9792.6882forward
CNT30605418Populus trichocarpaGossypium raimondii10.1329.3393.9883forward
CNT30219096Populus trichocarpaKalanchoe fedtschenkoi9.5222.2294.8778forward
CNT30619768Populus trichocarpaCajanus cajan9.8932.495.0681forward
CNT30704991Populus trichocarpaPrunus avium10.7428.4896.5988forward

Expression of CNT3024261

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFIVVYMSGYVLIASLSLRLDMVYMQLVAFQMKR

>peptide 2 (44 aa)
MGRMRGYPDFNVYCGLHEWLCVNSQFVTAIGHGLHAIGCVSNEKG

>peptide 3 (44 aa)
MILLDFQTGWKWDFVFAYWASMLCYYDDLLLFFFLFELESTDWH*

Sequence

>CNT3024261
GCCCAATAAAATTAGGGTTTCATATCATTAGTATTTAAATACCGGCGAAGCCCCTAAACGTAGCAGCTCTCTCTATCATTCTCCGCTGCCTCTAGGATTC
TGAATCAAAAGAAAGAAGGAACACAGAGCTTGGATACTTTGTCACCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAAAGGAAGCGCCGA
AAGATGAGGCAGAGATCCAAGTAGTTTTCTATTTTATCAATAATAGTGAAAGTTGTCGTTCGTTTTAGTATTTCTTGTTTCAGTTATCAGTACTACTTTC
AACTGAGTAGATTATTTCCGTTTTAAATTTCATGATTTTGTTAGACTTTCAAACTGGATGGAAATGGGATTTTGTTTTTGCTTATTGGGCTTCAATGCTG
TGTTATTATGATGATCTCTTGCTGTTCTTTTTCTTGTTTGAATTGGAGTCGACGGACTGGCACTAGTTCTGTTTGCTAGACCCCTAGACACAAGGGTATA
GTGATGATTGTTGTTGATTCACTGGGGTGTAGTTAAATGTCAGTGTAGGTGCTCGCTGTATCTAGGTATGGATTACTAGGGAAGAAGTTATCAGAAATAA
TTTTTCGCAAGTGCTCTTTGCCAATCTTGGGAATTACCGAGGATGCTGGAATCTGTGATTAACTTGGTGCTGCAATGATTCAGTATGGGGAGGATGAGAG
GATACCCTGATTTTAATGTTTATTGTGGTTTACATGAGTGGCTATGTGTTAATAGCCAGTTTGTCACTGCGATTGGACATGGTTTACATGCAATTGGTTG
CGTTTCAAATGAAAAGGGG