Detailed information on CNT30261673


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701352Brassica rapaQuercus lobata7.320.29580forward
CNT30372647Brassica rapaArabidopsis thaliana7.0326.5598.777forward
CNT3071712Brassica rapaQuercus suber7.320.159580forward
CNT30191267Brassica rapaSecale cereale7.2123.2492.4179forward
CNT30224947Brassica rapaHordeum vulgare7.1226.5389.7478forward
CNT30395161Brassica rapaTriticum turgidum7.1221.9189.7478forward
CNT30543929Brassica rapaBrassica napus42.15102.2193.51462forward
CNT30235682Brassica rapaBrassica oleracea47.63102.3589.46522forward
CNT30310640Brassica rapaCamelina sativa17.9747.3690.86197forward
CNT3060687Brassica rapaArabidopsis lyrata11.6832.8290.62128forward
CNT3075281Brassica rapaBrassica juncea39.8710095.88437forward
CNT30135839Brassica rapaLolium perenne7.1232.9192.3178forward
CNT30721855Brassica rapaTriticum spelta7.1220.5389.7478forward
CNT30725207Brassica rapaLupinus angustifolius7.322.2292.580forward
CNT30115058Brassica rapaEutrema salsugineum12.5931.1591.3138forward

Expression of CNT30261673

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKTLLFHLLPLFSLISVSLEIFKSTFGLVSFQFLNCS*

>peptide 2 (46 aa)
MGQANKYTSKLGFSRVYIHNYASFPLLVTVTVNSPTRVSRKRVSPT*

Sequence

>CNT30261673
ATTTATTTTTTATTTTATTATGCACTTTCCAATAAATTTTCATCAATGAAATTTAATCAATTAAAATATTTCAATTAATGTTTCTCAAAAATATAAAAAA
ATAATCTATCTTTGTCGAACAAGAAAAAAAAATCTAAAAAATCTTACTTTCTTTCAAAAAATATTTTTCTTCAAAACTCAAGAAAATATTTTATGAGTTC
TAGTTAAAACTCTTAAAACTATTCTATTTTGAATTCTTTAAGAGTTTTAACTCTAACCCAACTGCAAATCAATGCATGATAACAAGGATTCCACGATGAT
TGACCCTTTTTAACAAACAATTATTTTAATCATAGCAAAGAAAATAAAACAAAAACACAATCTAGCTTAAATTTTTGAAAATAATTTCTCCTAATTTACT
GAGAGCTGAGAAAATACACAAGTAAGGCCCAAATCTATTATATGGGCCAAGCAAACAAATATACCTCTAAACTAGGGTTCTCAAGGGTATATATTCACAA
CTACGCTTCATTTCCTCTCCTTGTTACCGTCACCGTGAATTCGCCGACTAGGGTTTCAAGAAAAAGAGTTTCTCCGACATGAGAGCCAAGTGGAAGAAGA
AGCGTATGAGGAGGCTTAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGACTCAGAGAGAGAGTGACTCGTCTTCATGAAGACTCTGCTTTTC
CATCTGCTTCCTTTGTTTTCCCTCATTTCAGTTTCGCTAGAGATCTTTAAAAGTACTTTCGGTTTGGTCTCGTTTCAGTTTTTGAATTGTTCGTAGCTTT
GTTTTTGTCGGATTGTAGAGATCCTCAATTAATGGCAATGCTATATGTTTTTATTCACCAGTCTTATTTATATTCTTGCACACTAATTTAGGTTTTGAAA
GTATTATCGTCTAGCTTATAGATCCTATGGAATAACTCAGATTTAGGTTGTACGATCTTGGAATATACAAATCTTGTTTGGTTAATCAAGAATGATCCAA
CACGTAATGCTTTGGAATATGATGGTAGTAGACTAGTAGTTAGTATTGTGATAATATCGTTGTGATTAGTCATTTTTAAGAAGAAAATGATCCTCA