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Detailed information on CNT30564366


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701352Actinidia chinensisQuercus lobata14.4821.2192.8684forward
CNT3071712Actinidia chinensisQuercus suber14.4821.1692.8684forward
CNT30224947Actinidia chinensisHordeum vulgare13.4526.5391.0378forward
CNT30395161Actinidia chinensisTriticum turgidum13.4521.9191.0378forward
CNT30467175Actinidia chinensisSaccharum spontaneum10.6926.596.7762forward
CNT30219096Actinidia chinensisKalanchoe fedtschenkoi13.6222.5192.4179forward
CNT3067939Actinidia chinensisLeersia perrieri11.3822.9295.4566reverse complement
CNT3024638Actinidia chinensisPopulus trichocarpa13.972591.3681forward
CNT30725207Actinidia chinensisLupinus angustifolius13.4521.6794.8778forward
CNT30115234Actinidia chinensisEutrema salsugineum14.3120.3491.5783forward

Expression of CNT30564366

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDLVLDILLLLRTSSGFLWINVSGNHLDMLLLNCELFAFDTLWFSQSCNSFFLV*

>peptide 2 (35 aa)
MSFAILIILICNLVTYGSRVRYITFIEDIKWIFMD*

Sequence

>CNT30564366
AAAGGCTATCGGCTCAACTGGGTCTCAGGCCCGCTTAGATTAGGGCCCAAGTTCGGAAACCCTAGACGTATATAAACGAAACTCCATTTCTTTTTCTCGC
CATCGCTGTGCTTGGGTTGATCTGGAGAGTACGACGAACCCAGACGCAGAAGAGAGAAAAGTCATCGAGGAAGGTTGCGAGTCACAATGAGGGCTAAGTG
GAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGACAAAGATCCAAGTAGACAATGCATTCTAACAAGATGGCTCCTCTTGAGGAG
ATTTTGAAGGGGAGCTTGCATTGACTCAGTTCCTACTTTAGTGTCATGTTTTGTTTGCACAATTTATGAGTTTTGCTATTTTGATCATTCTTATTTGCAA
CTTAGTGACTTATGGATCTCGTGTTAGATATATTACTTTTATTGAGGACATCAAGTGGATTTTTATGGATTAATGTGAGTGGTAATCATTTGGACATGCT
TTTGTTGAATTGTGAATTATTTGCCTTCGATACTTTATGGTTCTCCCAGAGCTGCAATAGTTTCTTCCTTGTTTAATTCG