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Detailed information on CNT30235682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701352Brassica oleraceaQuercus lobata15.6920.296.2580forward
CNT30372647Brassica oleraceaArabidopsis thaliana15.126.5597.477forward
CNT3071712Brassica oleraceaQuercus suber15.6920.1596.2580forward
CNT30191267Brassica oleraceaSecale cereale15.4923.2493.6779forward
CNT30543929Brassica oleraceaBrassica napus70.9880.0993.92362forward
CNT30310640Brassica oleraceaCamelina sativa27.6533.8993.62141forward
CNT3060687Brassica oleraceaArabidopsis lyrata25.132.8290.62128forward
CNT3075281Brassica oleraceaBrassica juncea71.5783.5295.34365forward
CNT30261673Brassica oleraceaBrassica rapa102.3547.6389.46522forward
CNT30137004Brassica oleraceaLolium perenne15.2933.3391.0378forward
CNT30619768Brassica oleraceaCajanus cajan15.4931.693.6779forward
CNT30725207Brassica oleraceaLupinus angustifolius15.6922.2293.7580forward
CNT30115058Brassica oleraceaEutrema salsugineum27.8432.0591.55142forward

Expression of CNT30235682

Peptides detected in this lncRNA

>peptide 1 (54 aa)
IFTTTLRFLSCYRHRELADQGFKKKSFSDMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30235682
TATATTCACAACTACGCTTCGTTTCCTCTCTTGTTACCGTCACCGTGAATTAGCCGATCAGGGTTTCAAGAAAAAGAGTTTCTCCGACATGAGAGCCAAG
TGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGACTCAGAGAGAGAGAGAGTGACTCCTCTTGAAAG
ACTTTGCTTTTCCATCTGCTTCCTTTGTTTCCCTCATTTCAGTTTCGCTAGAGATCTTTAAAAGTACTTTTGGTTTGGTCTCATTTCAGTTTTTTAAGTG
TTCGTAGCTTTGTTTTTGTCGGATTGTAGGATCCTCAATTAATGGCAATGCTATATGTTTTAATTCACCACTGTATTTACTCCTATTCTTGCACACGCCA
ATCTTAGTAATGATTTAGGTTTTGAAAGTATCATGCTTATAGATCCTGTGTAATAACTCAGATTTAGGTTGAACGATCTTGGAATATACAAATCTTGTTT
GTTTAATCAA