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Detailed information on CNT30338969

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695032	Eragrostis tef	Oryza sativa	30.69	28.83	94.74	190	forward
CNT30640430	Eragrostis tef	Nymphaea colorata	29.24	39.43	86.74	181	forward
CNT3020107	Eragrostis tef	Citrullus lanatus	20.52	11.1	83.46	127	forward
CNT30287394	Eragrostis tef	Triticum aestivum	27.3	20.19	94.08	169	forward
CNT30221234	Eragrostis tef	Hordeum vulgare	26.66	27.55	93.94	165	forward
CNT30680618	Eragrostis tef	Triticum urartu	27.3	17.59	93.49	169	forward
CNT30370757	Eragrostis tef	Oryza glumipatula	30.53	39.62	94.71	189	forward
CNT30147934	Eragrostis tef	Brachypodium distachyon	26.82	43.57	94.58	166	forward
CNT30102551	Eragrostis tef	Oryza rufipogon	30.69	20.52	94.74	190	forward
CNT30581265	Eragrostis tef	Echinochloa crusgalli	27.46	32.63	97.65	170	forward
CNT30604352	Eragrostis tef	Oryza punctata	28.43	30.56	96.02	176	forward
CNT30551395	Eragrostis tef	Oryza brachyantha	28.43	20.32	94.32	176	forward

Expression of CNT30338969

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVVWSGSLRCVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSG*

>peptide 2 (51 aa)
TETMHELSSLTRTIIQAGFVSSQKIDVQVNALIHHWFIYYTSPRSSSSSPN*

>peptide 3 (47 aa)
MNKDHRVPIPSRSPQNQTTHAFIHLEHILIDGWIGAESNIRMALIIN*

Sequence

>CNT30338969
CACTGAAACAATGCATGAGCTGAGCTCTTTAACAAGAACAATTATCCAGGCCGGTTTCGTATCATCCCAAAAGATCGATGTACAAGTGAATGCATTAATT
CATCATTGGTTCATATATTACACATCACCAAGAAGTTCCAGCAGTTCTCCTAATTAACCATACATCCTCCATTAAGAACATGAACAAAGATCATCGTGTC
CCCATACCCTCTCGCTCGCCACAAAATCAAACGACGCACGCGTTCATCCATCTCGAGCACATTCTCATCGACGGATGGATCGGAGCAGAAAGCAATATAC
GGATGGCCTTAATTATTAATTAAGAGGATCCGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTAAGGTGTGTGGCCCAGTTGTTGAGCGG
GCCCTTGCCTGTGGCCGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTC
TCCGGGTAGGACGACCCGTCCACCAGCTCAACCTACAGGTTTTGGATTTCGATCGAGTTGTTCATGCACAGATCGAGCAGAATTGCAATTCAAATTTCAA
ATCAATGTTCATAAGTGTG