« Back to Oryza sativa search


Detailed information on CNT30695032


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 6e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520570Oryza sativaSetaria italica48.7132.8294.7321forward
CNT30513329Oryza sativaJuglans regia42.0343.1580.87277forward
CNT30526506Oryza sativaPhaseolus vulgaris44.3124.6479.79292forward
CNT30708177Oryza sativaGlycine max46.4329.0982.35306forward
CNT30289853Oryza sativaTriticum aestivum49.1741.4993.52324forward
CNT30436081Oryza sativaAegilops tauschii32.6342.0791.16215forward
CNT30243799Oryza sativaAvena sativa49.1750.5591.05324forward
CNT30659938Oryza sativaTriticum dicoccoides34.7542.7293.01229forward
CNT30452520Oryza sativaSaccharum spontaneum51.922.8293.57342forward
CNT30229721Oryza sativaAnanas comosus46.2812.9988.52305forward
CNT30680618Oryza sativaTriticum urartu49.1733.7192.9324forward
CNT30338969Oryza sativaEragrostis tef28.8330.6994.74190forward
CNT30620949Oryza sativaCajanus cajan46.1328.2580.92304forward
CNT30370757Oryza sativaOryza glumipatula59.1881.7699.49390forward
CNT30147934Oryza sativaBrachypodium distachyon33.9958.7995.09224forward
CNT30577064Oryza sativaOryza barthii10086.2696.51659forward
CNT30117066Oryza sativaOryza nivara55.3953.5299.45365forward
CNT30551395Oryza sativaOryza brachyantha50.0838.1195.45330forward

Expression of CNT30695032

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQVAINHQPSFPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 2 (30 aa)
GCINSSSWVFLYYKSPPCKSPLTTNPAFLI*

>peptide 3 (49 aa)
MTSTSIQISVEIENGSGCPRNVLAAAATDDAMAAPLLLLLLRECVGGGEG

>peptide 4 (42 aa)
MTSPLSIPSQLARHHKTKQRARTHTNASIPFELRAKELKLRG*

>peptide 5 (61 aa)
MVVWSGSLRWVAQLLRGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDANPSGSK*

Sequence

>CNT30695032
TGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTTTCCTAATTTAAGTAGTA
ATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACAGCGCGCGCGAACGCACACCAACGCATCGATCC
CGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGT
TGAGGGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTC
CTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCG
ATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGAACGTGCTCGCCGCCGCTGCCACCGACGACG
CCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATGTGTGGGTGGTGGTGAGGGG