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Detailed information on CNT30659938


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 8e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Triticum dicoccoidesOryza sativa42.7234.7593.01229forward
CNT30520570Triticum dicoccoidesSetaria italica43.2823.7292.67232forward
CNT30640553Triticum dicoccoidesNymphaea colorata43.6629.0784.62234forward
CNT30513329Triticum dicoccoidesJuglans regia41.2334.4280.09221forward
CNT30708177Triticum dicoccoidesGlycine max41.4221.181.53222forward
CNT30221568Triticum dicoccoidesHordeum vulgare96.8349.5791.14519forward
CNT30562752Triticum dicoccoidesActinidia chinensis20.158.5489.81108forward
CNT30243799Triticum dicoccoidesAvena sativa43.6636.5194.87234forward
CNT30452520Triticum dicoccoidesSaccharum spontaneum43.2815.4892.67232forward
CNT30229721Triticum dicoccoidesAnanas comosus42.169.6388.05226forward
CNT30219415Triticum dicoccoidesKalanchoe fedtschenkoi38.8166.6779.81208forward
CNT3067780Triticum dicoccoidesLeersia perrieri23.6926.5798.43127forward
CNT30680853Triticum dicoccoidesTriticum urartu91.687.9995.11491forward
CNT30338970Triticum dicoccoidesEragrostis tef27.6127.7793.24148forward
CNT30620949Triticum dicoccoidesCajanus cajan41.2320.5481221forward
CNT30596639Triticum dicoccoidesOryza meridionalis48.1315.5989.92258forward
CNT30360911Triticum dicoccoidesLactuca sativa18.121.3282.4797forward
CNT30147934Triticum dicoccoidesBrachypodium distachyon35.4549.8791.05190forward
CNT30102551Triticum dicoccoidesOryza rufipogon30.4117.693.87163forward
CNT30577064Triticum dicoccoidesOryza barthii39.3727.6292.42211forward
CNT30581346Triticum dicoccoidesEchinochloa crusgalli43.6638.5593.16234forward
CNT30604352Triticum dicoccoidesOryza punctata28.3626.3992.76152forward
CNT30551395Triticum dicoccoidesOryza brachyantha43.6627.0292.74234forward

Expression of CNT30659938

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MVGGPVVEWPLAGGGGLHGEAEEGDHGEAGVLDLRQLQSLLLHRVRRESQRVEVGATGVEPPLRVQLRVALELDVPDH

Sequence

>CNT30659938
GTGGATGCTATTTTTGTAATCGCAAAAACGAAACAAAAGATTAGCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAA
ATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCA
AAGCACGTTCGTACACTGACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAAG
ATGGTGGGTGGCCCAGTTGTTGAGTGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATC
TCCGCCAGCTGCAGAGTCTCCTTCTTCACCGGGTCCGCCGCGAGTCCCAGCGGGTCGAAGTAGGAGCCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCT
CCGCGTTGCGCTGGAACTCGATGTACCCGATCACCA