Detailed information on CNT30386996


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 7e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Triticum turgidumSetaria viridis30.3135.5789.02164forward
CNT30520570Triticum turgidumSetaria italica44.9224.8588.89243forward
CNT30708177Triticum turgidumGlycine max35.1218.0681.05190forward
CNT30221643Triticum turgidumHordeum vulgare72.46101.5593.88392forward
CNT30562751Triticum turgidumActinidia chinensis26.9935.181.51146forward
CNT30554457Triticum turgidumOryza glaberrima45.2920.490.61245forward
CNT30243897Triticum turgidumAvena sativa45.8455.2392.34248forward
CNT30453511Triticum turgidumSaccharum spontaneum45.2946.4988.98245forward
CNT30219415Triticum turgidumKalanchoe fedtschenkoi27.7348.0881.33150forward
CNT30680980Triticum turgidumTriticum urartu96.399.4394.82521forward
CNT30338967Triticum turgidumEragrostis tef30.3133.6190.24164forward
CNT30620951Triticum turgidumCajanus cajan27.3614.2381.76148forward
CNT30596639Triticum turgidumOryza meridionalis45.2914.890.2245forward
CNT30370623Triticum turgidumOryza glumipatula45.2917.7390.61245forward
CNT30147796Triticum turgidumBrachypodium distachyon25.6935.0194.24139forward
CNT30102749Triticum turgidumOryza rufipogon40.6731.789.55220forward
CNT30577064Triticum turgidumOryza barthii40.6728.890220forward
CNT30581456Triticum turgidumEchinochloa crusgalli45.2942.6192.24245forward
CNT30116951Triticum turgidumOryza nivara43.0715.7589.7233forward
CNT30551395Triticum turgidumOryza brachyantha41.2225.7592.38223forward

Expression of CNT30386996

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVATMARRACLISASCRVSFFTGSAASPSGSK*

>peptide 2 (30 aa)
MYPITSTSIQINVVSVNGSGCPRYDDPSTSS

Sequence

>CNT30386996
ATTTTTGTAATCGCAAAAACGAAACAAAAGATTAGCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCACCAAG
TCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGTT
CGTACACTGACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAAGATGGTGGCG
ACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTCACCGGGTCCGCCGCGAGTCCCAGCGGGTCGAAGTAGGAGCCACCGG
GGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAACGTGGTGAGCGTGAACGG
CAGCGGCTGCCCCAGGTACGACGACCCGTCCACCAGCTCCA