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Detailed information on CNT30147934


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Brachypodium distachyonOryza sativa58.7933.9995.09224forward
CNT30520570Brachypodium distachyonSetaria italica58.7922.995.09224forward
CNT30640430Brachypodium distachyonNymphaea colorata50.3941.8386.46192forward
CNT30513329Brachypodium distachyonJuglans regia32.021984.43122forward
CNT30276136Brachypodium distachyonChenopodium quinoa2115.5386.2580forward
CNT3020107Brachypodium distachyonCitrullus lanatus33.3311.183.46127forward
CNT30485914Brachypodium distachyonOlea europaea36.7517.4881.43140forward
CNT30708177Brachypodium distachyonGlycine max34.3812.4585.5131forward
CNT30289853Brachypodium distachyonTriticum aestivum58.7928.6893.3224forward
CNT30221234Brachypodium distachyonHordeum vulgare43.3127.5594.55165forward
CNT30387477Brachypodium distachyonTriticum turgidum33.8624.8189.92129forward
CNT30562744Brachypodium distachyonActinidia chinensis34.3821.187.02131forward
CNT30243799Brachypodium distachyonAvena sativa58.7934.9592.41224forward
CNT30659938Brachypodium distachyonTriticum dicoccoides49.8735.4591.05190forward
CNT30452520Brachypodium distachyonSaccharum spontaneum58.0114.7495.02221forward
CNT30132393Brachypodium distachyonLolium perenne30.9720.195.76118forward
CNT30229721Brachypodium distachyonAnanas comosus58.019.4185.52221forward
CNT3067780Brachypodium distachyonLeersia perrieri32.0225.5293.44122forward
CNT30680618Brachypodium distachyonTriticum urartu58.7923.3192.86224forward
CNT30338969Brachypodium distachyonEragrostis tef43.5726.8294.58166forward
CNT30620951Brachypodium distachyonCajanus cajan27.039.985.44103forward
CNT30596509Brachypodium distachyonOryza meridionalis43.5710.9295.78166forward
CNT30360911Brachypodium distachyonLactuca sativa25.4621.3282.4797forward
CNT30370757Brachypodium distachyonOryza glumipatula43.3134.5995.76165forward
CNT30428948Brachypodium distachyonPapaver somniferum35.968.1480.29137forward
CNT30120689Brachypodium distachyonCitrus clementina34.1211.4280.77130forward
CNT3036109Brachypodium distachyonCucumis melo32.5511.9380.65124forward
CNT30102551Brachypodium distachyonOryza rufipogon55.1222.6894.76210forward
CNT30577064Brachypodium distachyonOryza barthii45.1422.5194.19172forward
CNT30581058Brachypodium distachyonEchinochloa crusgalli58.7922.9596.43224forward
CNT30496270Brachypodium distachyonDigitaria exilis25.9810.0393.9499forward
CNT30117066Brachypodium distachyonOryza nivara30.7117.1694.87117forward
CNT30604352Brachypodium distachyonOryza punctata55.1236.4692.38210forward
CNT30556500Brachypodium distachyonPanicum hallii30.4519.7395.69116forward
CNT30551395Brachypodium distachyonOryza brachyantha58.7925.8791.07224forward

Expression of CNT30147934

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKPTMARRACLISASCSRSFFSGSAASPSGSK*

>peptide 2 (48 aa)
FVRYFVTEGKKPTQEKCTSGCINSPLVSYITQITKVIPAALLSNQTCV*

Sequence

>CNT30147934
CTTTTGTTCGTTACTTTGTAACTGAGGGGAAAAAACCAACTCAAGAGAAATGTACAAGTGGATGCATTAATTCACCGTTGGTTTCATATATTACACAAAT
CACCAAAGTCATCCCAGCAGCTCTCCTAAGTAACCAGACCTGCGTTTAACCAACAAAGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGG
CCCAGTTGTTGAGCGGCCCTTTGCCCGTGGCGGCCGCCTGCACGGCGAAGCCGAGGAAGCCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTG
CAGCCGCTCCTTCTTCTCCGGGTCCGCCGCCAGCCCCAGCGGGTCGAAGTAGGACCCGCCCGGGTACAGCCTCTTCTCCGG