« Back to Oryza nivara search


Detailed information on CNT30116951


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 6e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Oryza nivaraOryza sativa46.5250.6696.8688forward
CNT30375654Oryza nivaraArabidopsis thaliana9.0627.6982.84134forward
CNT30290500Oryza nivaraTriticum aestivum15.9645.7491.1236forward
CNT30386996Oryza nivaraTriticum turgidum15.7543.0789.7233forward
CNT30554457Oryza nivaraOryza glaberrima72.8289.6895.731077forward
CNT30436081Oryza nivaraAegilops tauschii13.7339.7390.15203forward
CNT30659570Oryza nivaraTriticum dicoccoides15.0840.6989.24223forward
CNT30450549Oryza nivaraSaccharum spontaneum1975.9589.68281forward
CNT30680980Oryza nivaraTriticum urartu18.5952.4889.82275forward
CNT30720416Oryza nivaraTriticum spelta14.7436.2788.07218forward
CNT30596514Oryza nivaraOryza meridionalis49.6346.0294.14734forward
CNT30370789Oryza nivaraOryza glumipatula71.476.7497.441056forward
CNT30105722Oryza nivaraOryza longistaminata10.2853.7186.84152forward
CNT30147796Oryza nivaraBrachypodium distachyon9.435.0194.24139forward
CNT30581456Oryza nivaraEchinochloa crusgalli15.8240.795.73234forward
CNT30551395Oryza nivaraOryza brachyantha14.2724.3695.26211forward
CNT3039307Oryza nivaraMarchantia polymorpha5.2123.1985.7177forward

Expression of CNT30116951

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 2 (34 aa)
MVVWSGSLRRACLISASCSRSFFSGSDANPSGSK*

>peptide 3 (42 aa)
MCIHSHTHLVKYQDRSIDVQVDALIHHLGCSYITNHHHASRH*

>peptide 4 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 5 (34 aa)
MISPALFLARFWSSESSSNCRYSAGFPRPNGSKP*

>peptide 6 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

>peptide 7 (58 aa)
VKSMQCAYVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 8 (43 aa)
MLVVMYGGVSCTLPASCQVTPVSHSTERAPRVASMAQRPNTSV*

Sequence

>CNT30116951
AGGTAAAGTCTATGCAGTGTGCATATGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGATCGATGTACAAGTGGATGCATTAATTC
ATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATG
ACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCG
CGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCC
GCTCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAA
CTCAATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGTACGACGACCCATCCACCAGCTCCACC
TGAAAAACACCATCGGACCATTCCTACGTCAGTGTCATCGTCCTCGTCCGCGGCGCCGGCGATACGTAGTAACCAGGGTTTTAAATCTTTAGCTATAGCT
ATTTAAAAAAGGTGTAGCAATTTGTTCTCATGTACAATTTAGTCATAGCTGCCGCTATTTTAAGAGGCTAAACGCTAAATGTTTTAGCCCGCTAGCTATT
TGAAACAATGGTAGTGAGAAACGCCCAGAGGTTTTTCGGCTATCCCCACGGGCTAGACAAAAGCCCTACTCTTTCTAATTATTTGATATATTAGGTTATT
TTTTAATATTTGCTTTTTAAAAAAAATGCTGGTAGTAATGTATGGGGGAGTATCGTGTACCTTGCCGGCGTCTTGCCAGGTGACGCCGGTGAGCCACTCG
ACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGG
TGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCGCCGGCTTCCCGAGGCCGAACGGGTC
GAAGCCGTAGTCGCCGACGAGCGACCCGTCCAGGTAGTCCGGCGCCACCGCGCCGGGGAACCACAGCGGCCTGTCCGTCGTCGGCGCCGACGGCCTCGCC
GCCTTCTTCGCCGCCGCCTTCTTCCCGCCGCCGAACCCGAACCTCGCCACGATCCTCCCGCTCTGCGGCGCCGGGTCCGCCAGCCTCGTCCCCAGGAACG
TGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATATGTGGGTGGTGG