CANTATAdb - search

Detailed information on CNT30402245

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3020107	Beta vulgaris	Citrullus lanatus	22.96	11.54	86.36	132	forward
CNT30120689	Beta vulgaris	Citrus clementina	20.35	10.28	85.47	117	forward
CNT3036109	Beta vulgaris	Cucumis melo	21.39	11.84	85.37	123	forward
CNT30551395	Beta vulgaris	Oryza brachyantha	28.17	18.71	79.63	162	forward

Expression of CNT30402245

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGQTHNHPLSSHPTILGPWHLGTIMGGLCLILIWAELSWQPSWPQTQTGT*

>peptide 2 (32 aa)
VERVTQVGSPVVKRTFTSNSSLNSKAKEGNHS*

Sequence

>CNT30402245
GTGGAGCGGGTCACTCAAGTGGGTAGCCCAGTTGTTAAGCGGACCTTTACCAGTAACAGCAGCCTGAACAGCAAAGCCAAGGAAGGCAACCATAGCTAGC
CTGGCATGCTTGATCTCTGCCAACTGAAGGATTGGCTTCTTTTCCGGGTCAGACGCCAAGCCCAATGGTTCCAATGATGTCACCAGCCAAATTCTTGGCT
AAGTTCTGGTCCAAGCCATCATAGTCATATTGCAAATACTCTGCAGGCTTACCTAGCCCAAATGGGTCAAACCCATAATCACCCACTAAGCTCCCATCCA
ACCATTCTGGGGCCTTGGCACCTGGGTACCATAATGGGCGGTCTGTGCTTGATCCTGATCTGGGCTGAGCTTTCTTGGCAACCTTCTTGGCCCCAAACCC
AAACCGGCACGTGATCCTCCCTGAATTTGATGGGACATCGGGAAGACGAGTCCCGATAAAAGACGAGGTGGCGGCAGTGGCGGAGGCCGAGGCCATATTT
GATTGTTTTGTAGGATGGGTGGTGGTTATAGGTGGTAAAGGCCTAGAAGGGGTGTGTAAGATTTTTGGACTAAAG